CLUSTAL FORMAT for T-COFFEE Version_7.54 [http://www.tcoffee.org] [MODE:  ], CPU=0.85 sec, SCORE=76, Nseq=5, Len=453 

cDNA-MsrA-Aureococcus_anophagefferens-query1    GCGCC-GAG-CCGACGCGTCGCCACCTTCGCGCTCGGATGATTCTGGACGCCGCAGCAGA
cDNA-MsrA-Emiliania_huxley-query2               -------ACA----C------------TCGCGCTCGGGTGATTCTGGCACCCTGAGGAGG
cDNA-MsrA-Thalassiosira_pseudonana-query3       GCCCTTTCCAATGA--GGTGGCCGTTCTAGCTAGTGGATGATTCTGGCACCCCCAGCGCG
cDNA-MsrA-Thecamonas_trahens                    TCCCCCAAGACCGA--GATCGCCACCTTTGGCATGGGCTGATTCTGGAACCCACAGCCGC
cDNA-MsrA-Phaeodactylum_tricornutum-candidato1  G-----GA-AACGA--AGTTGCCATTGTTGCGTGTGGATGATTTTGGCATCCGCAACTCC
                                                                           * *     ** ***** ***   **  *     

cDNA-MsrA-Aureococcus_anophagefferens-query1    AGTTCGACCTGCGCGACGGCGTCATCTGGAGCACCGTGGGCTACACGTCGG-GCACGACG
cDNA-MsrA-Emiliania_huxley-query2               AGCTTGCAGCTCTCCCCGGGGTCTCGGAGACCGTGGTTGGCTACTGCGGTG-GCAGCACC
cDNA-MsrA-Thalassiosira_pseudonana-query3       ACTTTAAAAGGCTGGAGGGAGTTGTCGATGTGATTGTCGGCTACACAGGAGGGCAGAA-G
cDNA-MsrA-Thecamonas_trahens                    TGTTCGACGCCACGCGCGGCGTTGTGAGCACGGTTGTGGGTTACACCGGCG-GCACAACA
cDNA-MsrA-Phaeodactylum_tricornutum-candidato1  AATGGAGCACTGAGCCTGGAGTTGCGCGCTGTGTCGTGGGATACAGCGGAGGAAACGA-G
                                                                 ** **             ** ** ***      *   *  *  

cDNA-MsrA-Aureococcus_anophagefferens-query1    CCCGCACCGAACTACGACGACCTCGGCGACCACACGGAGGCGCTGCGGCTCGAATTCGAC
cDNA-MsrA-Emiliania_huxley-query2               GCCGATCCGACCTACAAGTCGATTGGCGATCACACAGAGGCCTTGCGTGTCACCTTCGAC
cDNA-MsrA-Thalassiosira_pseudonana-query3       AAGAATCCAACGTATCAGAACATAATGGATGCCACAGAGGCTTTTATCGTGGAGTTTGAT
cDNA-MsrA-Thecamonas_trahens                    AAGTCACCGACGTATCGCTCCATGGGTGACCACACCGAGGCCATCCAGATCACCTTTGAT
cDNA-MsrA-Phaeodactylum_tricornutum-candidato1  CCTGATCCGACATACCAAACGATTAAGGACCATACGGAAGCTGTGCTGATCGAGTACAAC
                                                      ** *  **        *    **    ** ** **  *     *    *   * 

cDNA-MsrA-Aureococcus_anophagefferens-query1    GAGGACGTCGTGAGCTACGAGGCGCTCGTAGAGCAGTTCTGGGACCTCCACGC-----GC
cDNA-MsrA-Emiliania_huxley-query2               TCGCGTGTGGTGTCGGCGGAGAGCATGCTCGAGCGCTTCTTTGAGATGCACGACCCGATG
cDNA-MsrA-Thalassiosira_pseudonana-query3       CCGTCTGTGATTTCTTACGAAGAGATATTGAATGAGTGGGCAGCCCAACATGC-----AC
cDNA-MsrA-Thecamonas_trahens                    CCCAACGTCGTCTCCTACGACACCCTTGTCGACATCTTCTTCGACTCGCACGC-CTGCTC
cDNA-MsrA-Phaeodactylum_tricornutum-candidato1  CCCGACATGATCTCGTACGAAAAAATTCTCAAACTGTGGGGAGAAGCGGACTACCC----
                                                       *  *       **     *  *  *    *     *      *          

cDNA-MsrA-Aureococcus_anophagefferens-query1    -CGAACA----AGGGGAGCC-GCCAGTACCGGAGCGCCATCTTCTATCACGACGAGGCGC
cDNA-MsrA-Emiliania_huxley-query2               CCG--CGTGCCTTCACGGGCACTCAGTACCGCTCCGCCATCTTCTATCACAACGACGCGC
cDNA-MsrA-Thalassiosira_pseudonana-query3       -CGTTCTAC-CCCAGTAAAT-GCCAATATAGATCGGCGATATTTTACTGCAGTGAGGAAC
cDNA-MsrA-Thecamonas_trahens                    TCGTCCGGTCGGTAAGAAGC-GCCAGTACATCTCCGCCATCTGGTACGCGTCTGAGGAGC
cDNA-MsrA-Phaeodactylum_tricornutum-candidato1  --ATACTCGCCGC-AAAAGC-GTCAATACCGTTCAGGTGTTTTTTACTTGACCGAAGAGC
                                                     *                 ** **       *   * *  **       ** *  *

cDNA-MsrA-Aureococcus_anophagefferens-query1    AGCGCGAGTGCGC---GGAGCGCGTG----CAGGCGCAGC---TCTTCCCCTCG-AAGCG
cDNA-MsrA-Emiliania_huxley-query2               AGGCCGAGACGGC---GGCGGCCGTG---GCGGGC-CGGC---AGGCGTCCTCGCAAGCG
cDNA-MsrA-Thalassiosira_pseudonana-query3       AACAATCCGCAGC---TCAAAAGAAGATTGAAGAGCTGGGG--AAAGATGG---TCAGCG
cDNA-MsrA-Thecamonas_trahens                    AGAAGGCCGTCGC---CGAAGCCAAG----AAGGC-CGCC---ATGGGCCCTC---AGTG
cDNA-MsrA-Phaeodactylum_tricornutum-candidato1  AGGCAAAGTCGGCCAAGGAATTCG--TTGGCAAATTAAGCGCTAAACACTCCGGTGAACG
                                                *          **                                           *  *

cDNA-MsrA-Aureococcus_anophagefferens-query1    TTACGTCCGCGACACGGC--CATCGAGCCGGCGGCCGAGTTCTTCCCGGCGGAGGCGTAC
cDNA-MsrA-Emiliania_huxley-query2               A-------AGCACACCTC--GATCGAGCCGGCCGGTCCATTTTACCGCGCTGAAGAGTAC
cDNA-MsrA-Thalassiosira_pseudonana-query3       A-T----CAGTGTATGTTGATTTGGAACCCGTGTCTGCGTTCTACCGAGGGGAAGAGTAC
cDNA-MsrA-Thecamonas_trahens                    C-ACGA---C-AGA------AGTCGCTCCCGCCGGTCCTTGGTACGATGCCGAGGAGTAC
cDNA-MsrA-Phaeodactylum_tricornutum-candidato1  C-----AAGCTCTACGTTGACATTGAGCCTGTGACAAAGTTTTACCGCGGTGAAGAATAC
                                                             *        * *  ** *        *  * *   *  ** *  ***

cDNA-MsrA-Aureococcus_anophagefferens-query1    CACCAGAAGTACCGC------------GAGAAG
cDNA-MsrA-Emiliania_huxley-query2               CACCAGCGCTTTCTGGCTAAGCAGACGGGGCGG
cDNA-MsrA-Thalassiosira_pseudonana-query3       CATCAAGACTTTCTA------------GACAAA
cDNA-MsrA-Thecamonas_trahens                    CACCAAAAGTACATC------------CAGAAG
cDNA-MsrA-Phaeodactylum_tricornutum-candidato1  CACCAGTTCTTTTTG------------GAGAAG
                                                ** **    *