T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=76
*
 BAD AVG GOOD
*
cDNA-MsrA-Aureo   :  76
cDNA-MsrA-Emili   :  75
cDNA-MsrA-Thala   :  75
cDNA-MsrA-Theca   :  76
cDNA-MsrA-Phaeo   :  77
cons              :  76

cDNA-MsrA-Aureo   GCGCC-GAG-CCGACGCGTCGCCACCTTCGCGCTCGGATGATTCT
cDNA-MsrA-Emili   -------ACA----C------------TCGCGCTCGGGTGATTCT
cDNA-MsrA-Thala   GCCCTTTCCAATGA--GGTGGCCGTTCTAGCTAGTGGATGATTCT
cDNA-MsrA-Theca   TCCCCCAAGACCGA--GATCGCCACCTTTGGCATGGGCTGATTCT
cDNA-MsrA-Phaeo   G-----GA-AACGA--AGTTGCCATTGTTGCGTGTGGATGATTTT

cons                                         * *     ** ***** *


cDNA-MsrA-Aureo   GGACGCCGCAGCAGAAGTTCGACCTGCGCGACGGCGTCATCTGGA
cDNA-MsrA-Emili   GGCACCCTGAGGAGGAGCTTGCAGCTCTCCCCGGGGTCTCGGAGA
cDNA-MsrA-Thala   GGCACCCCCAGCGCGACTTTAAAAGGCTGGAGGGAGTTGTCGATG
cDNA-MsrA-Theca   GGAACCCACAGCCGCTGTTCGACGCCACGCGCGGCGTTGTGAGCA
cDNA-MsrA-Phaeo   GGCATCCGCAACTCCAATGGAGCACTGAGCCTGGAGTTGCGCGCT

cons              **   **  *                      ** **        


cDNA-MsrA-Aureo   GCACCGTGGGCTACACGTCGG-GCACGACGCCCGCACCGAACTAC
cDNA-MsrA-Emili   CCGTGGTTGGCTACTGCGGTG-GCAGCACCGCCGATCCGACCTAC
cDNA-MsrA-Thala   TGATTGTCGGCTACACAGGAGGGCAGAA-GAAGAATCCAACGTAT
cDNA-MsrA-Theca   CGGTTGTGGGTTACACCGGCG-GCACAACAAAGTCACCGACGTAT
cDNA-MsrA-Phaeo   GTGTCGTGGGATACAGCGGAGGAAACGA-GCCTGATCCGACATAC

cons                   ** ** ***      *   *  *        ** *  ** 


cDNA-MsrA-Aureo   GACGACCTCGGCGACCACACGGAGGCGCTGCGGCTCGAATTCGAC
cDNA-MsrA-Emili   AAGTCGATTGGCGATCACACAGAGGCCTTGCGTGTCACCTTCGAC
cDNA-MsrA-Thala   CAGAACATAATGGATGCCACAGAGGCTTTTATCGTGGAGTTTGAT
cDNA-MsrA-Theca   CGCTCCATGGGTGACCACACCGAGGCCATCCAGATCACCTTTGAT
cDNA-MsrA-Phaeo   CAAACGATTAAGGACCATACGGAAGCTGTGCTGATCGAGTACAAC

cons                     *    **    ** ** **  *     *    *   * 


cDNA-MsrA-Aureo   GAGGACGTCGTGAGCTACGAGGCGCTCGTAGAGCAGTTCTGGGAC
cDNA-MsrA-Emili   TCGCGTGTGGTGTCGGCGGAGAGCATGCTCGAGCGCTTCTTTGAG
cDNA-MsrA-Thala   CCGTCTGTGATTTCTTACGAAGAGATATTGAATGAGTGGGCAGCC
cDNA-MsrA-Theca   CCCAACGTCGTCTCCTACGACACCCTTGTCGACATCTTCTTCGAC
cDNA-MsrA-Phaeo   CCCGACATGATCTCGTACGAAAAAATTCTCAAACTGTGGGGAGAA

cons                     *  *       **     *  *  *    *     *  


cDNA-MsrA-Aureo   CTCCACGC-----GC-CGAACA----AGGGGAGCC-GCCAGTACC
cDNA-MsrA-Emili   ATGCACGACCCGATGCCG--CGTGCCTTCACGGGCACTCAGTACC
cDNA-MsrA-Thala   CAACATGC-----AC-CGTTCTAC-CCCAGTAAAT-GCCAATATA
cDNA-MsrA-Theca   TCGCACGC-CTGCTCTCGTCCGGTCGGTAAGAAGC-GCCAGTACA
cDNA-MsrA-Phaeo   GCGGACTACCC------ATACTCGCCGC-AAAAGC-GTCAATACC

cons                  *               *                 ** **  


cDNA-MsrA-Aureo   GGAGCGCCATCTTCTATCACGACGAGGCGCAGCGCGAGTGCGC--
cDNA-MsrA-Emili   GCTCCGCCATCTTCTATCACAACGACGCGCAGGCCGAGACGGC--
cDNA-MsrA-Thala   GATCGGCGATATTTTACTGCAGTGAGGAACAACAATCCGCAGC--
cDNA-MsrA-Theca   TCTCCGCCATCTGGTACGCGTCTGAGGAGCAGAAGGCCGTCGC--
cDNA-MsrA-Phaeo   GTTCAGGTGTTTTTTACTTGACCGAAGAGCAGGCAAAGTCGGCCA

cons                   *   * *  **       ** *  **          **  


cDNA-MsrA-Aureo   -GGAGCGCGTG----CAGGCGCAGC---TCTTCCCCTCG-AAGCG
cDNA-MsrA-Emili   -GGCGGCCGTG---GCGGGC-CGGC---AGGCGTCCTCGCAAGCG
cDNA-MsrA-Thala   -TCAAAAGAAGATTGAAGAGCTGGGG--AAAGATGG---TCAGCG
cDNA-MsrA-Theca   -CGAAGCCAAG----AAGGC-CGCC---ATGGGCCCTC---AGTG
cDNA-MsrA-Phaeo   AGGAATTCG--TTGGCAAATTAAGCGCTAAACACTCCGGTGAACG

cons                                                       *  *


cDNA-MsrA-Aureo   TTACGTCCGCGACACGGC--CATCGAGCCGGCGGCCGAGTTCTTC
cDNA-MsrA-Emili   A-------AGCACACCTC--GATCGAGCCGGCCGGTCCATTTTAC
cDNA-MsrA-Thala   A-T----CAGTGTATGTTGATTTGGAACCCGTGTCTGCGTTCTAC
cDNA-MsrA-Theca   C-ACGA---C-AGA------AGTCGCTCCCGCCGGTCCTTGGTAC
cDNA-MsrA-Phaeo   C-----AAGCTCTACGTTGACATTGAGCCTGTGACAAAGTTTTAC

cons                           *        * *  ** *        *  * *


cDNA-MsrA-Aureo   CCGGCGGAGGCGTACCACCAGAAGTACCGC------------GAG
cDNA-MsrA-Emili   CGCGCTGAAGAGTACCACCAGCGCTTTCTGGCTAAGCAGACGGGG
cDNA-MsrA-Thala   CGAGGGGAAGAGTACCATCAAGACTTTCTA------------GAC
cDNA-MsrA-Theca   GATGCCGAGGAGTACCACCAAAAGTACATC------------CAG
cDNA-MsrA-Phaeo   CGCGGTGAAGAATACCACCAGTTCTTTTTG------------GAG

cons                 *  ** *  ***** **    *                    


cDNA-MsrA-Aureo   AAG
cDNA-MsrA-Emili   CGG
cDNA-MsrA-Thala   AAA
cDNA-MsrA-Theca   AAG
cDNA-MsrA-Phaeo   AAG

cons