Command line: [exonerate -m p2g --showtargetgff -q MrsAaureococcus.fa -t candidato1subseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: MsrA.Aureococcus_anophagefferens.3 located on scaffold_4 strand + positions 1209101,1209514
        Target: gi|298517490|gb|GL349484.1|:subseq(49500,1500) Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.52, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 267
   Query range: 0 -> 138
  Target range: 530 -> 941

   1 : AlaProSerArgArgValAlaThrPheAlaLeuGlyUnkPheTrpThrProGlnGlnLysPheA :  22
       :!!|||!.!! !..!:!!|||||||||!.!:!!|||   ||||||!.!||||||! !  !||||
       SerProLysThrGluIleAlaThrPheGlyMetGly***PheTrpAsnProGlnProLeuPheA
 531 : TCCCCCAAGACCGAGATCGCCACCTTTGGCATGGGCTGATTCTGGAACCCACAGCCGCTGTTCG : 594

  23 : spLeuArgAspGlyValIleTrpSerThrValGlyTyrThrSerGlyThrThrProAlaProAs :  43
       ||  !! !  !||||||:!: ! !!!..!||||||||||||.!!|||||||||  !:!!|||!.
       spAlaThrArgGlyValValSerThrValValGlyTyrThrGlyGlyThrThrLysSerProTh
 595 : ACGCCACGCGCGGCGTTGTGAGCACGGTTGTGGGTTACACCGGCGGCACAACAAAGTCACCGAC : 657

  44 : nTyrAspAspLeuGlyAspHisThrGluAlaLeuArgLeuGluPheAspGluAspValValSer :  64
       .|||  !..!:!!||||||||||||||||||:!!!:!:!!   ||||||   :!!|||||||||
       rTyrArgSerMetGlyAspHisThrGluAlaIleGlnIleThrPheAspProAsnValValSer
 658 : GTATCGCTCCATGGGTGACCACACCGAGGCCATCCAGATCACCTTTGATCCCAACGTCGTCTCC : 720

  65 : TyrGluAlaLeuValGluGlnPheTrpAspLeuHisAla<-><-><->ProAsnLysGlySerA :  83
       |||!!:.!!||||||!!:   |||!::|||! !||||||         |||  !     !!.!|
       TyrAspThrLeuValAspIlePhePheAspSerHisAlaCysSerArgProValGlyLysLysA
 721 : TACGACACCCTTGTCGACATCTTCTTCGACTCGCACGCCTGCTCTCGTCCGGTCGGTAAGAAGC : 786

  84 : rgGlnTyrArgSerAlaIlePheTyrHisAspGluAlaGlnArgGluCysAlaGluArgValGl : 104
       ||||||||! !|||||||||!::|||   ..!|||! !|||!:!!    !||||||  !  !:!
       rgGlnTyrIleSerAlaIleTrpTyrAlaSerGluGluGlnLysAlaValAlaGluAlaLysLy
 787 : GCCAGTACATCTCCGCCATCTGGTACGCGTCTGAGGAGCAGAAGGCCGTCGCCGAAGCCAAGAA : 849

 105 : nAlaGlnLeuPheProSerLysArgTyrValArgAspThrAlaIleGluProAlaAlaGluPhe : 125
       !|||   :!!  !|||..!             !!   |||! !:!!!  ||||||!.!   !::
       sAlaAlaMetGlyProGln------------CysThrThrGluValAlaProAlaGlyProTrp
 850 : GGCCGCCATGGGCCCTCAG------------TGCACGACAGAAGTCGCTCCCGCCGGTCCTTGG : 900

 126 : PheProAlaGluAlaTyrHisGlnLysTyrArgGluLys : 138
       !:!  !||||||! !|||||||||||||||! !:!!|||
       TyrAspAlaGluGluTyrHisGlnLysTyrIleGlnLys
 901 : TACGATGCCGAGGAGTACCACCAAAAGTACATCCAGAAG : 941

vulgar: MsrA.Aureococcus_anophagefferens.3 0 138 . gi|298517490|gb|GL349484.1|:subseq(49500,1500) 530 941 + 267 M 77 231 G 0 9 M 33 99 G 4 0 M 24 72
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|298517490|gb|GL349484.1|:subseq(49500,1500)	exonerate:protein2genome:local	gene	531	941	267	+	.	gene_id 1 ; sequence MsrA.Aureococcus_anophagefferens.3 ; gene_orientation .
gi|298517490|gb|GL349484.1|:subseq(49500,1500)	exonerate:protein2genome:local	cds	531	941	.	+	.	
gi|298517490|gb|GL349484.1|:subseq(49500,1500)	exonerate:protein2genome:local	exon	531	941	.	+	.	insertions 9 ; deletions 4
gi|298517490|gb|GL349484.1|:subseq(49500,1500)	exonerate:protein2genome:local	similarity	531	941	267	+	.	alignment_id 1 ; Query MsrA.Aureococcus_anophagefferens.3 ; Align 531 1 231 ; Align 771 78 99 ; Align 870 115 72
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis