Command line: [exonerate -m p2g --showtargetgff -q MrsAaureococcus4.fa -t fastasubseq2.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: MsrA.Aureococcus_anophagefferens.3 located on scaffold_4 strand + positions 1209101,1209514
        Target: gi|288565257|gb|GG743940.1|:subseq(99500,1000) Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.58, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 167
   Query range: 5 -> 84
  Target range: 21 -> 270

   6 : ValAlaThrPheAlaLeuGlyUnkPheTrpThrProGlnGlnLysPheAspLeuArgAspGlyV :  27
       |||||||||||||||  !|||   ||||||  !  !|||!   ! |||.!.! !! !.!.||||
       ValAlaThrPheAlaAlaGlyCysPheTrpGlyValGlnLeuHisPheGlnArgMetGlnGlyV
  22 : GTCGCGACGTTCGCCGCTGGCTGCTTCTGGGGTGTTCAGCTCCACTTTCAACGCATGCAAGGCG :  85

  28 : alIleTrpSerThrValGlyTyrThrSerGlyThrThrProAlaProAsnTyrAspAspLeu<- :  48
       ||:!: ! !!!!:!||||||||||||!:!|||  !..!|||  !|||!..||||||.!.:!!  
       alLeuGlyThrSerValGlyTyrThrAsnGlyHisValProHisProThrTyrAspGlnValCy
  86 : TTCTGGGTACTAGCGTCGGCTACACCAACGGACACGTGCCCCATCCGACGTACGACCAGGTCTG : 148

  49 : ><-><-><->GlyAspHisThrGluAlaLeuArgLeuGluPheAspGluAspValValSerTyr :  65
                   !! !|||.!!||||||:!!|||:!!:!!||||||  !..!||||||||||||
       sAlaGlyThrThrGlyHisAlaGluAlaValArgValGlnPheAspProSerValValSerTyr
 149 : CGCGGGCACGACGGGCCACGCCGAGGCAGTCCGCGTCCAGTTTGACCCGAGCGTCGTGTCGTAC : 211

  66 : GluAlaLeuValGluGlnPheTrpAspLeuHisAlaProAsnLysGlySerArgGln :  84
       !!:! !|||:!!!!::!!||||||...:!!|||! !|||!..! !  !!:!||||||
       AspGluLeuLeuAspLysPheTrpSerIleHisAspProThrThrLeuAsnArgGln
 212 : GACGAGCTCCTTGACAAGTTCTGGTCGATCCACGACCCAACGACGCTCAACCGACAA : 270

vulgar: MsrA.Aureococcus_anophagefferens.3 5 84 . gi|288565257|gb|GG743940.1|:subseq(99500,1000) 21 270 + 167 M 42 126 G 0 12 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|288565257|gb|GG743940.1|:subseq(99500,1000)	exonerate:protein2genome:local	gene	22	270	167	+	.	gene_id 1 ; sequence MsrA.Aureococcus_anophagefferens.3 ; gene_orientation .
gi|288565257|gb|GG743940.1|:subseq(99500,1000)	exonerate:protein2genome:local	cds	22	270	.	+	.	
gi|288565257|gb|GG743940.1|:subseq(99500,1000)	exonerate:protein2genome:local	exon	22	270	.	+	.	insertions 12 ; deletions 0
gi|288565257|gb|GG743940.1|:subseq(99500,1000)	exonerate:protein2genome:local	similarity	22	270	167	+	.	alignment_id 1 ; Query MsrA.Aureococcus_anophagefferens.3 ; Align 22 6 126 ; Align 160 48 111
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis