Command line: [exonerate -m p2g --showtargetgff -q MsrATpseudonana.fa -t candidato1.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: MsrA.Thalassiosira_pseudonana located on gi|209487159|gb|AAFD02000002.1|:subseq(503436,4497) strand + positions 1988,2497
        Target: gi|217408615|gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 7, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 306
   Query range: 2 -> 139
  Target range: 383367 -> 382676

      3 : SerAsnGluValAlaValLeuAlaSerGlyUnkPheTrpHisProGlnArgAspPheL :     22
          .!!||||||||||||:!!:!!|||!!!|||   |||||||||||||||! !.!.!::!
          GlyAsnGluValAlaIleValAlaCysGly***PheTrpHisProGlnLeuGlnTrpS
 383367 : GGAAACGAAGTTGCCATTGTTGCGTGTGGATGATTTTGGCATCCGCAACTCCAATGGA : 383310

     23 : ysArg  >>>> Target Intron 1 >>>>  LeuGluGlyValValAspValIle :     31
          ..! !            110 bp             !   ||||||!.!  !  !:!!
          erThr++                         ++GluProGlyValAlaArgCysVal
 383309 : GCACTgt.........................agGAGCCTGGAGTTGCGCGCTGTGTC : 383173

     32 : ValGlyTyrThrGlyGlyGlnLysLysAsnProThrTyrGlnAsnIleMet  >>>>  :     49
          |||||||||!:!||||||.!.:!!   :!!||||||||||||!..|||! !       
          ValGlyTyrSerGlyGlyAsnGluProAspProThrTyrGlnThrIleLys++     
 383172 : GTGGGATACAGCGGAGGAAACGAGCCTGATCCGACATACCAAACGATTAAGgt..... : 383117

     50 : Target Intron 2 >>>>  AspAlaThrGluAlaPheIleValGluPheAspPro :     60
               76 bp            |||  !||||||||| ! :!::!!|||!:!:!!|||
                              ++AspHisThrGluAlaValLeuIleGluTyrAsnPro
 383116 : ....................agGACCATACGGAAGCTGTGCTGATCGAGTACAACCCC : 383010

     61 : SerValIleSerTyrGluGluIleLeuAsnGlu  >>>> Target Intron 3 >> :     72
          ..!:!!||||||||||||:!!||||||!!.  !            88 bp        
          AspMetIleSerTyrGluLysIleLeuLysLeu+-                       
 383009 : GACATGATCTCGTACGAAAAAATTCTCAAACTGgc....................... : 382972

     73 : >>  TrpAlaAlaGlnHisAlaProPheTyrProSerLysCysGlnTyrArgSerAla :     89
              |||!.!! !  ! !!  !|||!:!!  |||..!||| !!||||||||||||!.!
            ++TrpGlyGluAlaAspTyrProTyrSerProGlnLysArgGlnTyrArgSerGly
 382971 : ..agTGGGGAGAAGCGGACTACCCATACTCGCCGCAAAAGCGTCAATACCGTTCAGGT : 382835

     90 : IlePheTyrCysSerGluGluGlnGlnSerAlaAlaGlnLysLysIleGluGluLeuG :    109
          :!!||||||!  !!!|||||||||  !!.!:!!|||:!!:!!   :!!!  :!!|||.
          ValPheTyrLeuThrGluGluGlnAlaLysSerAlaLysGluPheValGlyLysLeuS
 382834 : GTTTTTTACTTGACCGAAGAGCAGGCAAAGTCGGCCAAGGAATTCGTTGGCAAATTAA : 382775

    110 : ly<-><->LysAspGlyGlnArgSerValTyrValAspLeuGluProValSerAlaPh :    126
          !!       ! ..!|||:!!|||!.!:!!|||||||||:!!|||||||||!!!  !||
          erAlaLysHisSerGlyGluArgLysLeuTyrValAspIleGluProValThrLysPh
 382774 : GCGCTAAACACTCCGGTGAACGCAAGCTCTACGTTGACATTGAGCCTGTGACAAAGTT : 382718

    127 : eTyrArgGlyGluGluTyrHisGlnAspPheLeuAspLys :    139
          |||||||||||||||||||||||||  !||||||!!:|||
          eTyrArgGlyGluGluTyrHisGlnPhePheLeuGluLys
 382717 : TTACCGCGGTGAAGAATACCACCAGTTCTTTTTGGAGAAG : 382677

vulgar: MsrA.Thalassiosira_pseudonana 2 139 . gi|217408615|gb|CM000610.1| 383367 382676 - 306 M 21 63 5 0 2 I 0 106 3 0 2 M 25 75 5 0 2 I 0 72 3 0 2 M 23 69 5 0 2 I 0 84 3 0 2 M 38 114 G 0 6 M 30 90
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-03
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	gene	382677	383367	306	-	.	gene_id 1 ; sequence MsrA.Thalassiosira_pseudonana ; gene_orientation +
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	cds	383305	383367	.	-	.	
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	exon	383305	383367	.	-	.	insertions 0 ; deletions 0
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	splice5	383303	383304	.	-	.	intron_id 1 ; splice_site "GT"
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	intron	383195	383304	.	-	.	intron_id 1
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	splice3	383195	383196	.	-	.	intron_id 0 ; splice_site "AG"
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	cds	383120	383194	.	-	.	
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	exon	383120	383194	.	-	.	insertions 0 ; deletions 0
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	splice5	383118	383119	.	-	.	intron_id 2 ; splice_site "GT"
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	intron	383044	383119	.	-	.	intron_id 2
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	splice3	383044	383045	.	-	.	intron_id 1 ; splice_site "AG"
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	cds	382975	383043	.	-	.	
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	exon	382975	383043	.	-	.	insertions 0 ; deletions 0
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	splice5	382973	382974	.	-	.	intron_id 3 ; splice_site "GC"
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	intron	382887	382974	.	-	.	intron_id 3
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	splice3	382887	382888	.	-	.	intron_id 2 ; splice_site "AG"
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	cds	382677	382886	.	-	.	
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	exon	382677	382886	.	-	.	insertions 6 ; deletions 0
gi|217408615|gb|CM000610.1|	exonerate:protein2genome:local	similarity	382677	383367	306	-	.	alignment_id 1 ; Query MsrA.Thalassiosira_pseudonana ; Align 383368 3 63 ; Align 383195 24 75 ; Align 383044 49 69 ; Align 382887 72 114 ; Align 382767 110 90
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis