Command line: [exonerate -m p2g --showtargetgff -q MsrATpseudonana.fa -t candidato1subseq.fa --exhaustive]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: MsrA.Thalassiosira_pseudonana located on gi|209487159|gb|AAFD02000002.1|:subseq(503436,4497) strand + positions 1988,2497
        Target: gi|284795300|gb|GL291020.1|:subseq(31500,1000) Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig23, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 162
   Query range: 4 -> 139
  Target range: 930 -> 495

   5 : GluValAlaValLeuAlaSerGlyUnkPheTrpHisProGlnArgAspPheLysArgLeuGluG :  26
       |||  !|||..!!!!|||:!!|||   ||||||  !  !:!!  !! !|||:!!|||:!!!  |
       GluLysAlaThrPheAlaAlaGlyCysPheTrpSerValGluLeuValPheGlnArgMetValG
 930 : GAAAAAGCTACATTTGCAGCAGGATGTTTTTGGAGTGTTGAATTAGTCTTTCAGAGAATGGTTG : 867

  27 : lyValValAspValIleValGlyTyrThrGlyGlyGlnLysLysAsnProThrTyrGlnAsnIl :  47
       |||||:!!.....!! !||||||||||||..!|||  !|||  !||||||||||||:!!.!.:!
       lyValLeuSerThrArgValGlyTyrThrAsnGlyValLysLeuAsnProThrTyrLysGluVa
 866 : GTGTATTATCGACAAGAGTGGGCTATACAAACGGTGTAAAGTTGAACCCAACCTACAAAGAGGT : 804

  48 : eMetAspAlaThr<-><-><-><->GluAlaPheIleValGluPheAspProSerValIleSer :  64
       !     !!.!|||            |||||| !!   :!!||||||||||||:!!  !:!:|||
       lCysThrGlyThrThrGlyHisAlaGluAlaValGluLeuGluPheAspProAlaGlnValSer
 803 : ATGCACTGGAACCACCGGCCACGCAGAGGCAGTCGAGTTGGAGTTTGACCCAGCACAAGTGTCA : 741

  65 : TyrGluGluIleLeuAsnGluTrpAlaAlaGlnHisAlaProPheTyrProSerLys<-><->< :  84
       |||!  :!!:!:|||:!!!  !::  !  !:!!|||! !|||  !  !  !!:!:::       
       TyrGlyGlnLeuLeuAspValPheTrpLysLysHisAspProThrThrLeuAsnArgGlnGlyG
 740 : TACGGTCAGTTGTTGGACGTCTTCTGGAAGAAACATGACCCAACTACTTTGAACCGTCAGGGAG : 675

  85 : -><-><-><->CysGlnTyrArgSerAlaIlePheTyrCysSerGluGluGlnGlnSerAlaAl : 101
                    !||||||||||||!.!|||!:!|||  !!:!!!:..!|||!!.!!!! !||
       lyAspGlnGlyThrGlnTyrArgSerGlyIleTyrTyrHisAsnAspArgGlnHisThrGluAl
 674 : GTGACCAAGGAACTCAATACCGTTCCGGTATCTACTACCACAACGATCGACAACATACAGAGGC : 612

 102 : aGlnLysLysIleGluGluLeuGlyLysAspGlyGlnArgSerValTyrValAspLeuGluPro : 122
       |:!!:!!!..!  :!!:!!  !  !  ! !   !:!!!:! !!:!!   ..!!!::!!  !|||
       aGluGluSerLysLysGlnGluGlnLeuLysTyrLysGlnProIleValThrGluIleLeuPro
 611 : AGAGGAAAGCAAGAAGCAAGAGCAATTGAAATACAAGCAACCAATCGTAACAGAGATATTGCCT : 549

 123 : ValSerAlaPheTyrArgGlyGluGluTyrHisGlnAspPheLeuAspLys : 139
       !.!.!!!.!||||||! !!.!|||||||||||||||.!.!:!|||.!.|||
       AlaGlyValPheTyrProAlaGluGluTyrHisGlnGlnTyrLeuGlnLys
 548 : GCTGGTGTATTCTACCCAGCTGAAGAATACCATCAACAATATTTACAGAAA : 496

vulgar: MsrA.Thalassiosira_pseudonana 4 139 . gi|284795300|gb|GL291020.1|:subseq(31500,1000) 930 495 - 162 M 47 141 G 0 12 M 32 96 G 0 18 M 56 168
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|284795300|gb|GL291020.1|:subseq(31500,1000)	exonerate:protein2genome:local	gene	496	930	162	-	.	gene_id 1 ; sequence MsrA.Thalassiosira_pseudonana ; gene_orientation .
gi|284795300|gb|GL291020.1|:subseq(31500,1000)	exonerate:protein2genome:local	cds	496	930	.	-	.	
gi|284795300|gb|GL291020.1|:subseq(31500,1000)	exonerate:protein2genome:local	exon	496	930	.	-	.	insertions 30 ; deletions 0
gi|284795300|gb|GL291020.1|:subseq(31500,1000)	exonerate:protein2genome:local	similarity	496	930	162	-	.	alignment_id 1 ; Query MsrA.Thalassiosira_pseudonana ; Align 931 5 141 ; Align 778 52 96 ; Align 664 84 168
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis