genewise output
Score 13.54 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

MsrA-Thalassios   89 AIFYCSEEQQSAA                                     
                     ++F+CS  +  AA                                     
                     SVFWCSSFEAKAA                                     
gi|199611558|gb  210 agttttttggagg                                     
                     gttggcctacacc                                     
                     cctgctttgcaat                                     


//
>gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000).pep
SVFWCSSFEAKAA
//
>gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000).[210:248].sp
AGCGTCTTTTGGTGCTCTTCTTTTGAGGCCAAAGCAGCT
//
gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000)	GeneWise	match	210	248	13.54	+	.	gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000)-genewise-prediction-1
gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000)	GeneWise	cds	210	248	0.00	+	0	gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000)-genewise-prediction-1
//

genewise output
Score 39.13 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

MsrA-Thalassios    6 VAVLASGXFWHPQRDFKRLEGVVDVIVGYTGGQKKNPTYQNIMDA---- 
                     VA+ A+G  W  Q  F R+ GV++  VG + G    PTY  +        
                     VAMFAAGCDWGVQLAFDRIPGVLETSVGSS!GTVDRPTYAQVCTGKTKH 
gi|199611558|gb -561 ggatgggtgtggccgtgcacggcgatggtt5gaggacatgcgtagaaac 
                     tcttccggaggtatctagtcgttacctgcc gctagccacatgcgacaa 
                     tagtttctcgtcaggccttttaggaggttg tcgtacaccggcacgggt 


MsrA-Thalassios   51 TEAFIVEFDPSVISYEEILNEWAAQHAPFYPSK------CQYRSAIFYC 
                      EA+ + FD   +SY+ +L+++ + + P   ++       QYRS + Y  
                     AEAIKIVFDDRQVSYDALLSKFWSIYDPTSLNRQNTEQGTQYRSGVCYH 
gi|199611558|gb -412 gggaaagtggccgttggcctatttatgcatcaccaagcgactctggttc 
                     cactatttaagatcaacttcatgctaaccctagaacaagcaagcgtgaa 
                     tactgcatcccgagtcgagagcgctcctgggtcatggacggttgatttt 


MsrA-Thalassios   94 SEEQQSAAQKKIEELGKDGQRSVYVDLEPVSAFYRGEEYH          
                     +EEQ  AA    EE  K   + +  ++E    ++  E++H          
                     TEEQGKAALASKEEHQKTLSKPIVTEIEAAKQIWAAEDHH          
gi|199611558|gb -265 aggcgaggtgtaggccaactacagagagggacatggggcc          
                     caaagacctccaaaaaactcacttcataccaatgccaaaa          
                     tgggaattgcaaagcagggggttgagtaacgatgttgccc          


//
>gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000).pep
VAMFAAGCDWGVQLAFDRIPGVLETSVGSSXGTVDRPTYAQVCTGKTKHAEAIKIVFDDR
QVSYDALLSKFWSIYDPTSLNRQNTEQGTQYRSGVCYHTEEQGKAALASKEEHQKTLSKP
IVTEIEAAKQIWAAEDHH
//
>gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000).[561:470].sp
GTTGCAATGTTTGCTGCTGGCTGTGACTGGGGTGTCCAACTGGCGTTCGACCGTATTCCT
GGTGTACTGGAGACATCGGTGGGTTCTTCG
>gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000).[466:144].sp
GGTACCGTGGATAGACCCACATACGCCCAGGTGTGCACAGGCAAGACGAAGCATGCTGAA
GCCATTAAGATCGTATTTGACGACCGCCAGGTATCGTATGACGCGCTACTGTCAAAGTTC
TGGTCCATTTACGACCCTACGTCGCTGAATCGCCAAAATACGGAGCAAGGCACGCAGTAT
CGTTCGGGAGTTTGTTATCATACTGAGGAGCAGGGAAAAGCTGCTTTGGCCTCAAAAGAA
GAGCACCAAAAGACGCTGTCGAAGCCTATTGTGACAGAGATTGAAGCAGCCAAGCAAATT
TGGGCTGCTGAGGACCACCAC
//
gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000)	GeneWise	match	561	472	7.28	-	.	gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000)-genewise-prediction-1
gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000)	GeneWise	cds	561	472	0.00	-	0	gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000)-genewise-prediction-1
gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000)	GeneWise	match	466	146	39.84	-	.	gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000)-genewise-prediction-2
gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000)	GeneWise	cds	466	146	0.00	-	0	gi|199611558|gb|ABWE01000254.1|:subseq(16000,1000)-genewise-prediction-2
//