genewise output
Score 83.24 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

MsrA-Thalassios    6 VAVLASGXFWHPQRDFKRLEGVVDVIVGYTGGQKKNPTYQNIMDA---- 
                     VA  A+G FW  Q  F R+ GV++  VGYT G   NPTY  +        
                     VATFAAGCFWGVQLAFDRIPGVLETSVGYTQGTVDNPTYTQVCSGKTKH 
gi|199611310|gb   25 ggatgggtttggccgtgcacggcgatggtacgaggacatacgttgaaac 
                     tcctccggtggtatctagtcgttacctgacagctaaccacatgcgacaa 
                     tagtttctcgtcaggccttttaggaggtcagtcgtccgtcggcacgggc 


MsrA-Thalassios   51 TEAFIVEFDPSVISYEEILNEWAAQHAPFYPSK------CQYRSAIFYC 
                      EA+ + FD   +SY+ +L+++ + H P   ++       QYRS I+Y  
                     AEAIKIVFDDRKLSYDALLSKFWSIHDPTTLNRQKNDQGTQYRSGIYYH 
gi|199611310|gb  172 gggaaagtggcatttggcctatttacgcaacaccaagcgactctgattc 
                     cactatttaagatcaacttcatgctaaccctagaaaaagcaagcgtaaa 
                     tactgcgtcccaagtcgagggcgttcccgggtcaaccacggttgcatct 


MsrA-Thalassios   94 SEEQQSAAQKKIEELGKDGQRSVYVDLEPVSAFYRGEEYHQDFLDK    
                     +EEQ+ AA     E  K   +S+  ++E  + F+  E+ HQ +L+K    
                     TEEQRKAALASKGEHQKTLSKSIVTEIEAATRFWVAEDNHQKYLEK    
gi|199611310|gb  319 aggccaggtgtaggccaactatagagagggacttggggaccatcga    
                     caaagacctccagaaaactcacttcatacccgtgtcaaaaaaataa    
                     tgggaattgcgaagcgggaggttgggtaacgctgccgtccagcgaa    


//
>gi|199611310|gb|ABWE01000502.1|:subseq(21100,1000).pep
VATFAAGCFWGVQLAFDRIPGVLETSVGYTQGTVDNPTYTQVCSGKTKHAEAIKIVFDDR
KLSYDALLSKFWSIHDPTTLNRQKNDQGTQYRSGIYYHTEEQRKAALASKGEHQKTLSKS
IVTEIEAATRFWVAEDNHQKYLEK
//
>gi|199611310|gb|ABWE01000502.1|:subseq(21100,1000).[25:456].sp
GTTGCAACGTTTGCTGCTGGCTGTTTCTGGGGTGTCCAACTGGCGTTCGACCGTATTCCT
GGTGTACTGGAGACATCGGTGGGTTACACACAGGGTACCGTGGATAACCCCACGTATACC
CAGGTGTGCTCAGGCAAGACGAAGCACGCTGAAGCCATTAAGATCGTGTTTGACGACCGC
AAATTATCGTATGACGCGCTACTGTCGAAGTTCTGGTCTATTCACGACCCCACGACGCTG
AATCGCCAAAAAAACGACCAAGGCACGCAGTATCGTTCGGGCATATATTACCATACTGAG
GAGCAGCGAAAAGCTGCTTTGGCCTCGAAAGGAGAGCACCAGAAGACGCTATCGAAGTCT
ATTGTGACGGAGATTGAAGCAGCCACGCGCTTTTGGGTCGCCGAGGATAACCACCAAAAG
TACCTGGAAAAA
//
gi|199611310|gb|ABWE01000502.1|:subseq(21100,1000)	GeneWise	match	25	456	91.23	+	.	gi|199611310|gb|ABWE01000502.1|:subseq(21100,1000)-genewise-prediction-1
gi|199611310|gb|ABWE01000502.1|:subseq(21100,1000)	GeneWise	cds	25	456	0.00	+	0	gi|199611310|gb|ABWE01000502.1|:subseq(21100,1000)-genewise-prediction-1
//

genewise output
Score 13.04 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

MsrA-Thalassios   89 AIFYCSEEQQSAA                                     
                     ++F+CS  +  AA                                     
                     SVFWCSPFEAKAA                                     
gi|199611310|gb -374 agttttctggagg                                     
                     gttggcctacacc                                     
                     cccgcttcgcaat                                     


//
>gi|199611310|gb|ABWE01000502.1|:subseq(21100,1000).pep
SVFWCSPFEAKAA
//
>gi|199611310|gb|ABWE01000502.1|:subseq(21100,1000).[374:334].sp
AGCGTCTTCTGGTGCTCTCCTTTCGAGGCCAAAGCAGCT
//
gi|199611310|gb|ABWE01000502.1|:subseq(21100,1000)	GeneWise	match	374	336	13.04	-	.	gi|199611310|gb|ABWE01000502.1|:subseq(21100,1000)-genewise-prediction-1
gi|199611310|gb|ABWE01000502.1|:subseq(21100,1000)	GeneWise	cds	374	336	0.00	-	0	gi|199611310|gb|ABWE01000502.1|:subseq(21100,1000)-genewise-prediction-1
//