Command line: [exonerate -m p2g --showtargetgff -q MsrAEmiliana.fa -t candidatoDfastasubseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: MsrA.Emiliania_huxleyi.5 located on scaffold_31:subseq(711193,4407) strand - positions 2001,2408
        Target: supercontig_1.3:subseq(1660300,1200) of Capsaspora owczarzaki ATCC 30864:[revcomp]
         Model: protein2genome:local
     Raw score: 106
   Query range: 77 -> 135
  Target range: 368 -> 188

  78 : GlyThrGlnTyrArgSerAlaIlePheTyrHisAsnAspAlaGlnAlaGluThrAlaAlaAla< :  99
       ||||||||||||||||||||||||||||||  !:!!:!!||||||  !!!:.!!|||  !||| 
       GlyThrGlnTyrArgSerAlaIlePheTyrValAspAsnAlaGlnLysAspAlaAlaLeuAlaS
 368 : GGAACGCAATACCGCTCGGCAATCTTTTACGTCGACAACGCGCAGAAGGACGCTGCCTTGGCCT : 305

 100 : -><->ValAlaGlyArgGlnAlaSerSerGlnAlaLysHisThrSerIleGluProAlaGlyPr : 118
            ! !|||! !!:!:!!  !!!!|||:!! !!!    !|||..!:!!    !!|||! !  
       erArgGluAlaGluGlnLysGlnTrpSerLysProIleSerThrGluValThrAlaAlaAspVa
 304 : CGCGCGAAGCCGAGCAGAAGCAATGGTCCAAGCCAATCAGCACTGAAGTCACCGCCGCTGATGT : 242

 119 : oPheTyrArgAlaGluGluTyrHisGlnArgPheLeuAlaLysGlnThrGly : 135
       !||||||! !||||||!!:|||||||||!.!!:!!!!||||||.!.  !|||
       lPheTyrProAlaGluAspTyrHisGlnHisTyrPheAlaLysAsnGlyGly
 241 : CTTTTATCCCGCGGAGGACTACCATCAGCACTACTTTGCCAAGAATGGCGGC : 189

vulgar: MsrA.Emiliania_huxleyi.5 77 135 . supercontig_1.3:subseq(1660300,1200) 368 188 - 106 M 21 63 G 0 6 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-08
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
supercontig_1.3:subseq(1660300,1200)	exonerate:protein2genome:local	gene	189	368	106	-	.	gene_id 1 ; sequence MsrA.Emiliania_huxleyi.5 ; gene_orientation .
supercontig_1.3:subseq(1660300,1200)	exonerate:protein2genome:local	cds	189	368	.	-	.	
supercontig_1.3:subseq(1660300,1200)	exonerate:protein2genome:local	exon	189	368	.	-	.	insertions 6 ; deletions 0
supercontig_1.3:subseq(1660300,1200)	exonerate:protein2genome:local	similarity	189	368	106	-	.	alignment_id 1 ; Query MsrA.Emiliania_huxleyi.5 ; Align 369 78 63 ; Align 300 99 111
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis