TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23452038|gb|AAN32904.1| methionine-S-sulfoxide reductase
MsrA1 [Chlamydomonas reinhardtii] 
         (160 letters)

Database: A.taiwanensis/genome.fa 
           5379 sequences; 6,149,411 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABJQ01001795.1| Ascogregarina taiwanensis Contig2038, whole g...    34   0.009
gb|ABJQ01003841.1| Ascogregarina taiwanensis CLRanP117-E11.b1.ab...    26   2.5  
gb|ABJQ01000281.1| Ascogregarina taiwanensis Contig360, whole ge...    25   5.5  
gb|ABJQ01001815.1| Ascogregarina taiwanensis Contig2059, whole g...    24   7.2  
gb|ABJQ01003356.1| Ascogregarina taiwanensis Contig3694, whole g...    24   9.4  
gb|ABJQ01003202.1| Ascogregarina taiwanensis Contig3536, whole g...    24   9.4  
gb|ABJQ01003200.1| Ascogregarina taiwanensis Contig3534, whole g...    24   9.4  
gb|ABJQ01002781.1| Ascogregarina taiwanensis Contig3100, whole g...    24   9.4  

>gb|ABJQ01001795.1| Ascogregarina taiwanensis Contig2038, whole genome shotgun sequence
          Length = 703

 Score = 33.9 bits (76), Expect = 0.009
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 126 LATTVDPAGDWWDAEEYHQKY 146
           + TT++P  +W+ AE+YHQ+Y
Sbjct: 75  IVTTIEPMAEWYPAEDYHQEY 137


>gb|ABJQ01003841.1| Ascogregarina taiwanensis CLRanP117-E11.b1.ab1, whole genome
           shotgun sequence
          Length = 563

 Score = 25.8 bits (55), Expect = 2.5
 Identities = 19/77 (24%), Positives = 29/77 (37%)
 Frame = +1

Query: 54  VCAGDGHTEAMRVWFDPAIISYEDLLKQFFREHDPTQKSKCQYKSAVWYHSEAHGTALAA 113
           V A  GHT A+           +D        H+ T K     K A+ Y  + HG  +  
Sbjct: 88  VAAIKGHTNAITRLLAACPTLIDDQTCLHAVPHESTMKYLLDLKPALVYAVDGHGYTILH 267

Query: 114 VMKELEGKYRVRLATTV 130
           +M +  GK+ +     V
Sbjct: 268 LMLKERGKHSLEFIERV 318


>gb|ABJQ01000281.1| Ascogregarina taiwanensis Contig360, whole genome shotgun sequence
          Length = 380

 Score = 24.6 bits (52), Expect = 5.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 43  GGSRPNPTYESVCAGDGHTEAMRVWFD 69
           G SRP+P     C  DGH+     W D
Sbjct: 287 G*SRPDPRGFRRCRADGHSTLPASWSD 207


>gb|ABJQ01001815.1| Ascogregarina taiwanensis Contig2059, whole genome shotgun sequence
          Length = 1516

 Score = 24.3 bits (51), Expect = 7.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 94  CQYKSAVWYHSEAHGTALAAVMKELEGKYRVRLATTVDPAGDWW 137
           CQ+   V Y+S  +   L+ ++  L      RLA  +D A  WW
Sbjct: 698 CQHGPFVPYYSTVYYINLSLILSCL------RLARCLDRASRWW 811


>gb|ABJQ01003356.1| Ascogregarina taiwanensis Contig3694, whole genome shotgun sequence
          Length = 5233

 Score = 23.9 bits (50), Expect = 9.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 5    GNGASGAELATFALGUFWH 23
            GN  S    AT ALG FWH
Sbjct: 2446 GNS*SQPMRATSALGPFWH 2502


>gb|ABJQ01003202.1| Ascogregarina taiwanensis Contig3536, whole genome shotgun sequence
          Length = 2456

 Score = 23.9 bits (50), Expect = 9.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 5    GNGASGAELATFALGUFWH 23
            GN  S    AT ALG FWH
Sbjct: 1088 GNS*SQPMRATSALGPFWH 1032


>gb|ABJQ01003200.1| Ascogregarina taiwanensis Contig3534, whole genome shotgun sequence
          Length = 2982

 Score = 23.9 bits (50), Expect = 9.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 5    GNGASGAELATFALGUFWH 23
            GN  S    AT ALG FWH
Sbjct: 1887 GNS*SQPMRATSALGPFWH 1831


>gb|ABJQ01002781.1| Ascogregarina taiwanensis Contig3100, whole genome shotgun
          sequence
          Length = 2441

 Score = 23.9 bits (50), Expect = 9.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 5  GNGASGAELATFALGUFWH 23
          GN  S    AT ALG FWH
Sbjct: 53 GNS*SQPMRATSALGPFWH 109


  Database: A.taiwanensis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 6,149,411
  Number of sequences in database:  5379
  
Lambda     K      H
   0.317    0.131    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,272,642
Number of Sequences: 5379
Number of extensions: 19409
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of query: 160
length of database: 2,049,803
effective HSP length: 80
effective length of query: 80
effective length of database: 1,619,483
effective search space: 129558640
effective search space used: 129558640
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)