genewise output
Score 472.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

                  17 YVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNN 
                     YVRQG  +       +R LL + + P  GW+E+++  FL ELA MDSNN 
                     YVRQGGVSLGGRARAVRSLLSQRQLPRQGWNEASISAFLDELATMDSNN 
gi|298517527|gb  119 tgccgggtcggcgcggcacctcccccacgtaggaaagtcggcgaagtaa 
                     atgaggtctgggcgctggttcagatcgaggaacgtgcttaatcctacaa 
                     tgaaatgagcagctgggtcgggagggagcgcggcctctctgggggcgcc 


                  66 FLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLL 
                     F    GVGERE RV S LVARRH+ + HG+GRSG+++AVQPKAAGSSL+ 
                     FADRAGVGEREARVFSPLVARRHFGLGHGVGRSGELAAVQPKAAGSSLM 
gi|298517527|gb  266 tggcgggggcggcgttccggcactgcgcgggctggcgggccagggttca 
                     tcagcgtgagacgttccttcggatgtgagtggcgatcctacaccgcctt 
                     ttttttttgggtcgcgggatgactacctcccagcgattcgcgtcaaggg 


                 115 NKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTL-------- 
                      K+ N+LVL  ++LAG+      ++VP ATGM+L LC+L L         
                     YKLANALVLHALRLAGMRVAKKAIIVPTATGMALVLCLLALCAQDEEAN 
gi|298517527|gb  413 tacgagcgccgcccggacggaagaagcagagagcgctccgctgcgggga 
                     aatcactttactgtcgtgtcaactttccccgtctttgttctgcaaaaca 
                     cggcctttgcgtggacggcagacctggccgtggctctctgctggcggcc 


                 156 -------------RHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIE- 
                                     R   +Y+IWPRIDQK+ FK+++TAG+ P+V+E  
                     REEHGSSADDGGASESRHARRYVIWPRIDQKTAFKAILTAGLTPLVVEP 
gi|298517527|gb  560 cggcgtaggggggagaacgcctgatccagcaagtagacaggcaccgggc 
                     gaaagcgcaaggcgaggacggattgcgtaaacctacttccgtcctttac 
                     cggccgttcttgatgcacgggcccgggccagggcgccctggcggggggg 


                 191 -NVLEG-DELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEE 
                          G D L TD+  V A ++ +G D +LCI STTSCFAPR PD++   
                     RKCPRGSDALVTDVDGVRAAIESVGADNVLCILSTTSCFAPRTPDKVVA 
gi|298517527|gb  707 catccgaggcgagggggcggagtggggagctactaatttgccacgaggg 
                     gagcgggacttcatagtgcctactgcaattgttccccgtccgccaattc 
                     cgcacaccggccccccggagcggcccccggctcgcctctggagccgggg 


                 238 LAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNF 
                     LA + + Y I H+VNNAYGVQS +CM L+ + ARVGR+DAFVQS DKNF 
                     LAELASEYGIGHVVNNAYGVQSRRCMGLLNEAARVGRLDAFVQSTDKNF 
gi|298517527|gb  854 cggtgtgtgagcggaagtggctcctagccagggcggccggtgcaagaat 
                     tcatccaagtgattaacagtacgggtgttaaccgtggtacttagcaaat 
                     gggggcgcccgtgcccgctggggtcgtgccgtagccgatctcactcgct 


                 287 MVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYK 
                     MVPVGGA++A  N +F+  +S +YPGRASA+P +D+ ITLL++G  G+  
                     MVPVGGAVVASANKAFVDAVSLLYPGRASAAPIVDLFITLLAMGEEGWT 
gi|298517527|gb 1001 agcgggggggtgaagtggggtcctcgcgtggcaggctaaccgaggggta 
                     ttctggcttcccaacttactcttacggcccccttatttcttctgaaggc 
                     gggccccggagtcgcttcccggccggcgggaccccccccggcgcggagc 


                 336 KLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEH- 
                     +LL  R ++F Y   ++ +++E    RLL    N IS+A++L  L     
                     ELLASRADVFGYAQAELAQVAERTGLRLLDVRGNDISMALSLDALSSEC 
gi|298517527|gb 1148 gccgtcgggtgtgcggtgcgggcagccccggcgagatagctcggcatgt 
                     attccgcattgacacatcatcagcgtgttatggaatctctctactgcag 
                     gggcggccctccagcggcgctggtgcccccgcccccgggcgtcggccgc 


                 384 --RDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYP 
                        D AVT LGSMLF R VSGARVV     +T+   TF  + SH++    
                     GGDDDAVTMLGSMLFVRSVSGARVVVPSKTKTIGPVTFAHYGSHSSASS 
gi|298517527|gb 1295 gggggggaacgtactgctgtggcgggctaaaaagcgatgctgtcttgtt 
                     ggaaactcttgcttttgctcgcgtttccacactgctctcaagcaccccc 
                     cccctcccgccgggtgcgtgcccctcgcgcgcccgcgtcccggcggcgc 


                 431 CAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKES           
                       Y+N A+AIGM   D+D F+ R ++ L A RK  +  S           
                     EPYVNVAAAIGMTSTDIDRFVVRFEKTLAAWRKAHASPS           
gi|298517527|gb 1442 gctgaggggagaatagagctggctgaacggtcagcgtca           
                     acatatccctgtcccatagtttgtaactccggacacccg           
                     ggccccccctcgccgccccctcctgggccggcgacccgc           


//
>gi|298517527|gb|GL349447.1|:subseq(89500,3000).pep
YVRQGGVSLGGRARAVRSLLSQRQLPRQGWNEASISAFLDELATMDSNNFADRAGVGERE
ARVFSPLVARRHFGLGHGVGRSGELAAVQPKAAGSSLMYKLANALVLHALRLAGMRVAKK
AIIVPTATGMALVLCLLALCAQDEEANREEHGSSADDGGASESRHARRYVIWPRIDQKTA
FKAILTAGLTPLVVEPRKCPRGSDALVTDVDGVRAAIESVGADNVLCILSTTSCFAPRTP
DKVVALAELASEYGIGHVVNNAYGVQSRRCMGLLNEAARVGRLDAFVQSTDKNFMVPVGG
AVVASANKAFVDAVSLLYPGRASAAPIVDLFITLLAMGEEGWTELLASRADVFGYAQAEL
AQVAERTGLRLLDVRGNDISMALSLDALSSECGGDDDAVTMLGSMLFVRSVSGARVVVPS
KTKTIGPVTFAHYGSHSSASSEPYVNVAAAIGMTSTDIDRFVVRFEKTLAAWRKAHASPS
//
>gi|298517527|gb|GL349447.1|:subseq(89500,3000).[119:1558].sp
TATGTGCGACAAGGAGGTGTGTCACTGGGCGGACGGGCCCGTGCGGTGCGGAGTCTCCTG
TCGCAGCGACAGCTGCCGAGACAGGGCTGGAACGAGGCGAGCATCAGTGCCTTTCTCGAT
GAGCTGGCGACGATGGACTCGAACAACTTTGCTGATCGTGCTGGTGTTGGTGAGCGGGAG
GCTCGCGTGTTCTCGCCGCTGGTAGCTCGGAGACACTTTGGACTCGGCCATGGCGTCGGC
CGATCGGGCGAGCTAGCTGCTGTCCAGCCCAAGGCTGCCGGATCATCGCTGATGTACAAG
CTGGCCAACGCTCTTGTTCTGCACGCGCTTCGGCTGGCAGGCATGCGGGTCGCAAAGAAA
GCCATCATTGTGCCGACCGCCACGGGTATGGCGCTCGTTCTCTGTCTCCTTGCGCTCTGT
GCGCAGGACGAGGAGGCCAACCGCGAGGAGCACGGCTCGAGTGCTGACGATGGTGGGGCA
AGTGAGAGCAGACACGCGCGGCGGTACGTCATCTGGCCGCGGATCGACCAAAAGACGGCG
TTCAAGGCCATCCTCACTGCGGGGCTCACGCCGCTGGTGGTGGAGCCGCGCAAGTGCCCA
CGCGGAAGCGACGCGCTGGTCACCGACGTCGACGGCGTGCGGGCAGCGATCGAGTCGGTC
GGCGCCGACAACGTGCTGTGCATTCTCTCGACCACCTCTTGCTTTGCGCCGCGAACGCCC
GACAAGGTGGTGGCGCTGGCGGAGTTGGCGTCCGAGTACGGCATCGGGCATGTGGTCAAC
AACGCGTACGGTGTGCAGTCGCGGCGTTGCATGGGTCTGCTCAACGAGGCTGCACGGGTC
GGCCGGCTAGATGCCTTTGTCCAAAGCACTGACAAGAACTTTATGGTGCCGGTCGGCGGC
GCCGTGGTGGCATCGGCTAACAAGGCCTTTGTTGACGCCGTCTCGCTGCTCTACCCGGGG
CGCGCGTCGGCGGCACCCATCGTCGACCTCTTCATCACCCTGCTGGCCATGGGCGAGGAG
GGATGGACCGAGCTGCTGGCCTCGCGGGCCGACGTCTTTGGCTACGCACAGGCCGAGTTG
GCCCAGGTCGCTGAGCGGACTGGGCTCCGCCTCCTCGACGTGCGCGGCAACGACATCTCG
ATGGCGCTCTCGCTTGACGCGCTGAGCTCCGAGTGCGGCGGCGACGACGATGCCGTCACC
ATGCTCGGCTCGATGCTGTTTGTGCGCTCGGTTTCGGGCGCCCGCGTCGTTGTCCCGTCC
AAGACCAAGACCATCGGCCCGGTCACGTTTGCCCACTACGGGTCGCACTCGTCGGCCTCG
TCCGAGCCGTACGTCAACGTCGCCGCCGCCATTGGCATGACCTCCACGGACATCGACCGC
TTCGTTGTCCGCTTTGAGAAGACGCTCGCCGCGTGGCGCAAGGCACACGCCTCCCCGAGC
//
gi|298517527|gb|GL349447.1|:subseq(89500,3000)	GeneWise	match	119	1558	495.41	+	.	gi|298517527|gb|GL349447.1|:subseq(89500,3000)-genewise-prediction-1
gi|298517527|gb|GL349447.1|:subseq(89500,3000)	GeneWise	cds	119	1558	0.00	+	0	gi|298517527|gb|GL349447.1|:subseq(89500,3000)-genewise-prediction-1
//

genewise output
Score 15.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

                 453 RLDRCLKAV                                         
                     RLDRC  AV                                         
                     RLDRCPHAV                                         
gi|298517527|gb -775 ccgctccgg                                         
                     gtaggcact                                         
                     actccgccc                                         


//
>gi|298517527|gb|GL349447.1|:subseq(89500,3000).pep
RLDRCPHAV
//
>gi|298517527|gb|GL349447.1|:subseq(89500,3000).[775:747].sp
CGACTCGATCGCTGCCCGCACGCCGTC
//
gi|298517527|gb|GL349447.1|:subseq(89500,3000)	GeneWise	match	775	749	15.45	-	.	gi|298517527|gb|GL349447.1|:subseq(89500,3000)-genewise-prediction-1
gi|298517527|gb|GL349447.1|:subseq(89500,3000)	GeneWise	cds	775	749	0.00	-	0	gi|298517527|gb|GL349447.1|:subseq(89500,3000)-genewise-prediction-1
//