genewise output Score 14.28 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info 166 IWPRIDQKSCFKSMITAGFEP +W R ++ KS+ T G P LWSRRPERGLRKSVETPGRHP gi|217409454|gb 913 tttcccgcgccatggacgacc tgcggcaggtgactaccggac ggaagaactctgaaggtagta // >gi|217409454|gb|CM000608.1|:subseq(919000,2000).pep LWSRRPERGLRKSVETPGRHP // >gi|217409454|gb|CM000608.1|:subseq(919000,2000).[913:975].sp TTGTGGTCACGACGGCCAGAACGCGGTCTCCGTAAGTCAGTAGAGACGCCTGGAAGGCAT CCA // gi|217409454|gb|CM000608.1|:subseq(919000,2000) GeneWise match 913 975 14.28 + . gi|217409454|gb|CM000608.1|:subseq(919000,2000)-genewise-prediction-1 gi|217409454|gb|CM000608.1|:subseq(919000,2000) GeneWise cds 913 975 0.00 + 0 gi|217409454|gb|CM000608.1|:subseq(919000,2000)-genewise-prediction-1 // genewise output Score 368.89 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info 32 IRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGN----------- +R LL + PE+GW + ++ L+ +A +D+NN LRTLLVNRRLPEHGWSDVQIQHVLYTMATLDTNNKRSGSSSSDDSGSSR gi|217409454|gb-1570 tcatcgacctcgcgttggcaccgctaagatgaaaacagaaatggtgttc tgctttaggtcaaggcatataattactcctacaaaggggggcaacgccg gccgccctaggactgaccgcactgtcgaggtgccactccccgctctgcg 70 -CGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKI CGVGEREGRV SALV+ RH+ + HG+GRSGDI+ QPKA GS++L K+ WCGVGEREGRVYSALVSSRHFGLSHGVGRSGDIAEPQPKALGSTVLAKL gi|217409454|gb-1423 ttggggcggcgtagcgttcctgcacgggctggaggcccagcgtagcgac gggtgagaggtagcttccgatgtgagtggcgatcacacactgccttcat gtaccacaacgctcccgcctctacccgaccactcagacaagggccccac 118 TNSLVLDIIKL-AGVH--TVANC-FVVPMATGMSLTLCFLTLR-----H T LVLD ++ G+H T A ++P+ TGMS+ L + TLR H TLCLVLDAVRRGSGLHPQTAAKSGILLPLCTGMSMALVLGTLRQLQDNH gi|217409454|gb-1276 acttgcgggccgagccccaggatgacccctagaaagcgcgacccccgac ctgtttactgggggtacacccacgtttctgcgtgtctttgctgataaaa ggcgtgcgcggttagtgagccacttcagctctgtggcgctgggaaaccc 158 K-------RPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELR + +P ++W RIDQKSCFK++ +AG+E VV+ L GD + QTSANAAIKPYRNIVLWSRIDQKSCFKAIQSAGLECVVVPTRLAGDAVV gi|217409454|gb-1129 caagaggaactaaagttacagcaattagactggcgtgggcactgggggg acgcacctacagatttgggtaaaggtactaccgtagtttccgtcgactt accgttaaagcattcggtgttagttcggcggtcggctcgggagatcgcg 200 TDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIP TDL A +A + G D +L + +TTSCFAPRVPD+++ +A +CA +P TDLDAFQASLLTYG-DRVLAVVTTTSCFAPRVPDQVDAVARLCAEQCVP gi|217409454|gb -982 agtggtcgtccatg gcgcgggaaatttgccgcgcgggggactggctgc catactaccttcag agttcttccccgtccgtcaatactcgtgcaagtc gtgtccggtagtca cctgccgcagcctagggccagccgcagccaatag 249 HIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPV H++NNAYG+QSS L+ + VGR+DA+V S DKNFMVP+ HVINNAYGLQSSDTSKLLNRACAVGRVDAIVCSTDKNFMVPI gi|217409454|gb -838 cgaaagtgtcatgataccacgtgggcgggagttagaatagca attaacagtagcaccattagcgctggtacttgccaaatttct cccccgcggacctgcacctgtcactggtgtgtgccactggct 291 GAIIAGFNDSFIQEISKMYPGRA GAI+ ++S+IQ + K+Y GRA G:G[ggt] GAIVLSPDESLIQNVGKVYAGRA gi|217409454|gb -712 GGTAAGTA Intron 1 TAGGTggagctcggatacaggagtggcg <1-----[711 : 581]-1> gctttccaagttaatgatacggc tgttgagcacgcgcgcgaccttg 315 SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERL SASP LD+ ITL S+G GY++LL R+ ++ + ++K+++ Y ER+ SASPMLDLFITLCSMGLRGYQQLLTSRRILLPTFTERLKEVANKYGERV gi|217409454|gb -509 tgtcacgttaatttagccgtcctcatccacccatagctagggaatggcg ccccttatttctgctgtggaaattccggtttcctcagtaatcaaagagt gtacggtgctggccgtagctaaaggcgcaactgcgggaaacgcgctagc 364 LHTPHNPISLAMTLKTL------DE----HR---DKAVTQLGSMLFTRQ L N IS +TL L DE R + V+ LG+MLF R LECRTNCISFGVTLDGLVRPPRQDEDDVAYRTSVSRDVSSLGAMLFQRC gi|217409454|gb -362 cgtcaataatggatggtgcccccggggggtcaagaaggtatggactcct taggcagtgtgtctagttgccgaaaaatcagcgtggatcgtgctttagg ggtggttcttactgtcgctaacacgcttgtggtgtgcaccattggcagc 400 VSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVD VSG RVVP G++Q + G F GF S + YP AYL AA AIG+ + D VSGTRVVPRGTVQRMGGMEFCGFGSSHDAYPHAYLTAACAIGLTASEGD gi|217409454|gb -215 gagaaggccgagccaggagttgtgaacggtccgttaggtgagcagtggg tggcgttcggctagtggtatggtgggaacacacatcccgctgtcccaga gcgaggacgcgggcgcggatcttgttctctacccggggtgtagcgcaac 449 LFIKRLDRCLKAVRKERSKES F+ RLD+ L +K + + + DFFTRLDQTLHEFQKRQRRRA gi|217409454|gb -68 gttaccgcaccgtcacccccg attcgtaactaataagagggc ctttgctaggcataaaggtct // Making a G in phase 1 intron >gi|217409454|gb|CM000608.1|:subseq(919000,2000).pep LRTLLVNRRLPEHGWSDVQIQHVLYTMATLDTNNKRSGSSSSDDSGSSRWCGVGEREGRV YSALVSSRHFGLSHGVGRSGDIAEPQPKALGSTVLAKLTLCLVLDAVRRGSGLHPQTAAK SGILLPLCTGMSMALVLGTLRQLQDNHQTSANAAIKPYRNIVLWSRIDQKSCFKAIQSAG LECVVVPTRLAGDAVVTDLDAFQASLLTYGDRVLAVVTTTSCFAPRVPDQVDAVARLCAE QCVPHVINNAYGLQSSDTSKLLNRACAVGRVDAIVCSTDKNFMVPIGGAIVLSPDESLIQ NVGKVYAGRASASPMLDLFITLCSMGLRGYQQLLTSRRILLPTFTERLKEVANKYGERVL ECRTNCISFGVTLDGLVRPPRQDEDDVAYRTSVSRDVSSLGAMLFQRCVSGTRVVPRGTV QRMGGMEFCGFGSSHDAYPHAYLTAACAIGLTASEGDDFFTRLDQTLHEFQKRQRRRA // >gi|217409454|gb|CM000608.1|:subseq(919000,2000).[1570:4].sp TTGCGCACCTTGCTCGTCAACCGTCGATTGCCGGAACACGGTTGGTCAGACGTCCAGATC CAACACGTTCTGTATACCATGGCAACGTTGGATACGAACAACAAACGCAGTGGCAGCAGC AGCTCGGACGATTCCGGTTCGTCCCGGTGGTGTGGAGTCGGCGAACGCGAAGGACGCGTG TACAGTGCCCTCGTCTCGTCCCGCCATTTCGGTCTAAGCCACGGCGTGGGACGCTCCGGA GACATTGCCGAACCGCAACCCAAAGCACTGGGGTCGACCGTCCTCGCCAAACTCACGCTG TGCTTGGTTCTGGACGCGGTCCGGCGGGGTAGTGGACTGCATCCGCAAACGGCCGCCAAA TCCGGTATTCTCCTACCGCTCTGTACCGGTATGAGTATGGCGCTCGTGCTCGGTACGCTG CGGCAACTACAAGACAACCACCAAACCAGCGCGAATGCTGCAATAAAACCGTACAGAAAT ATTGTCTTGTGGAGTCGGATTGATCAAAAGAGTTGTTTCAAGGCGATCCAGTCGGCTGGC CTGGAGTGCGTTGTCGTGCCGACGCGATTGGCAGGTGACGCGGTCGTGACGGATTTGGAT GCCTTCCAGGCGTCTCTACTGACTTACGGAGACCGCGTTCTGGCCGTCGTGACCACAACG TCCTGCTTTGCACCGCGGGTGCCCGACCAAGTGGACGCCGTGGCCAGACTGTGCGCCGAA CAATGTGTACCGCACGTCATCAACAACGCGTACGGGTTGCAAAGCTCCGATACGTCCAAA CTCCTCAATCGGGCTTGCGCAGTCGGTCGGGTGGATGCGATTGTGTGTTCGACCGACAAA AACTTTATGGTGCCCATTGGTGGTGCGATTGTTCTGTCACCGGACGAAAGCTTGATCCAG AACGTGGGCAAGGTATACGCCGGTCGTGCGTCGGCTTCACCCATGCTGGATTTGTTCATT ACGTTGTGCTCCATGGGTCTACGGGGCTATCAACAATTACTGACGTCCCGGCGCATACTA CTCCCTACGTTCACGGAGCGGTTAAAAGAAGTCGCGAACAAGTACGGTGAACGGGTCCTG GAGTGTCGGACGAATTGTATCAGTTTTGGAGTCACTTTGGATGGCTTGGTCCGTCCACCA CGCCAAGACGAGGACGATGTTGCGTATCGGACGAGTGTGAGTAGGGACGTATCCAGCTTA GGTGCTATGCTGTTCCAACGGTGCGTGAGCGGGACAAGGGTGGTACCCCGGGGCACGGTG CAGCGCATGGGCGGGATGGAATTTTGCGGTTTTGGGAGTAGTCACGATGCCTATCCACAC GCCTACTTGACGGCGGCGTGTGCGATTGGACTGACCGCGTCCGAAGGAGACGACTTTTTT ACTCGGCTCGATCAAACGCTGCACGAATTTCAAAAACGACAGCGGCGTCGCGCT // gi|217409454|gb|CM000608.1|:subseq(919000,2000) GeneWise match 1570 6 400.83 - . gi|217409454|gb|CM000608.1|:subseq(919000,2000)-genewise-prediction-1 gi|217409454|gb|CM000608.1|:subseq(919000,2000) GeneWise cds 1570 712 0.00 - 0 gi|217409454|gb|CM000608.1|:subseq(919000,2000)-genewise-prediction-1 gi|217409454|gb|CM000608.1|:subseq(919000,2000) GeneWise intron 711 581 0.00 - . gi|217409454|gb|CM000608.1|:subseq(919000,2000)-genewise-prediction-1 gi|217409454|gb|CM000608.1|:subseq(919000,2000) GeneWise cds 580 6 0.00 - 2 gi|217409454|gb|CM000608.1|:subseq(919000,2000)-genewise-prediction-1 //