genewise output
Score 16.81 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

eEFsec            19 GKTALARALSTTASTAAFDKQPQSRER                       
                     G+   A+A  T++S + + + P++R R                       
                     GRVTRAQAPRTSSSLSGMPRDPRARSR                       
gi|298517478|gb  715 gcgacgcgccattactgaccgccgctc                       
                     ggtcgcaccgcccgtcgtcgacgcgcg                       
                     aggtataagtgggcggtgtgctatcat                       


//
>gi|298517478|gb|GL349496.1|:subseq(54000,2500).pep
GRVTRAQAPRTSSSLSGMPRDPRARSR
//
>gi|298517478|gb|GL349496.1|:subseq(54000,2500).[715:795].sp
GGACGGGTGACTCGAGCTCAAGCACCGCGTACGTCGTCGAGCCTGTCGGGTATGCCTCGG
GACCCTCGAGCTCGCTCACGT
//
gi|298517478|gb|GL349496.1|:subseq(54000,2500)	GeneWise	match	715	795	16.81	+	.	gi|298517478|gb|GL349496.1|:subseq(54000,2500)-genewise-prediction-1
gi|298517478|gb|GL349496.1|:subseq(54000,2500)	GeneWise	cds	715	795	0.00	+	0	gi|298517478|gb|GL349496.1|:subseq(54000,2500)-genewise-prediction-1
//

genewise output
Score 464.35 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

eEFsec             2 AGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLD 
                     A R +NVNVG+LGH+DSGKT+LA+ALST ASTAAFDK PQS+ RGITLD 
                     ASRVLNVNVGLLGHVDSGKTSLAKALSTLASTAAFDKHPQSQVRGITLD 
gi|298517478|gb-2038 gacgcagaggccgcggtgaatcgagctacgtaggtgaccctcgagaacg 
                     cggttatatgttgatacgacctcactcctccccctaaacacatggtcta 
                     gttgccccgctcacccgcggaacgaccactagtctcactacacaccccc 


eEFsec            51 LGFSCFSVPLP---ARLR-----SSLPEFQAA----------PEAEPEP 
                     LGFS + VPLP   A LR        P++ +           P  E E  
                     LGFSALRVPLPPALAGLRLDGHDDGTPDICSGTTSGNDTGDHPGKEDES 
gi|298517478|gb-1891 cgttgccgccccgcggcccggcgggacgattgaatgagaggccgagggt 
                     tgtcctgtctccctcgtgtagaaagccatgcgcccgaacgaacgaaaac 
                     ccctcttatcgacctccactgttttttcctcttaccttctttcaagcgg 


eEFsec            82 G-------EPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM 
                     G          +Q TLVDCPGHASLI+TIIGGA IID+M+LV+D   G+ 
                     GLLTVGDKYDEIQFTLVDCPGHASLIKTIIGGASIIDIMVLVVDAKAGF 
gi|298517478|gb-1744 gttagggatggactacggtcgcgtcaaaaagggtaagaagcggggaggt 
                     gttctgaaaaatatcttagcgaccttacttggccttattttttacacgt 
                     cgggcccgctgtgtcctcctaccggcgcccccccccccgcggcccgacc 


eEFsec           124 QTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLE 
                     QTQ+AECLVIG++    L+V LNKIDL PE KR + + KMTK++  TL+ 
                     QTQTAECLVIGELTADTLMVALNKIDLFPEEKRASKVAKMTKRVAATLK 
gi|298517478|gb-1597 cacaggtcgaggcaggacaggcaaagctcggacgaaggaaaacgggaca 
                     acaccagtttgatccactttctaatattcaaagcgatcatcagtcccta 
                     gggcagtgcccggaacacgccccgctctcaggggcggcggcggggggcg 


eEFsec           173 NTKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTR-DP 
                      T F  + I+PV+A  G           G+ +L++ LT+ + +PTR    
                     PTAFANSDILPVSASSG----------DGLSDLVDALTAAVRLPTRNEA 
gi|298517478|gb-1450 cagtgatgaccgtgtag          ggcagcgggcagggcccacagg 
                     ccctcacattctcccgg          agtgattactccctgtccgaac 
                     gactatacccgcgagtt          tccccccccctcccccgcccac 


eEFsec           221 SGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKS 
                        FL+++DHCF +KGQGTV+TGTI  GS+++G ++E+PAL + KKVKS 
                     EDAFLFAIDHCFQVKGQGTVVTGTIQRGSVAVGQTIEFPALGLSKKVKS 
gi|298517478|gb-1333 gggtctgagcttcgagcgaggagaaccgtggggcaagtcgcgctaagat 
                     aactttctaagtatagagcttcgctaggctctgactatcctgtcaatac 
                     gcgcctccccccgcgcgcttgcgccgccgtcgggccgcggccgcggcgg 


eEFsec           270 MQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALIS 
                     MQMF  P+  A+QGDRLGICV Q++ KLLERGL CAP ++  V AA++  
                     MQMFKAPVERAVQGDRLGICVAQLNAKLLERGLACAPGTIRAVSAAVVR 
gi|298517478|gb-1186 acatagcggcggcggccgatggccagaccgcgcgtgcgaacggtggggc 
                     tattacctagctagagtgtgtcatacattaggtcgccgctgctcccttg 
                     gggcgagcgaccgcccccccgcgcccgccgccccccaccccccgccccc 


eEFsec           319 VEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQEPILDSF 
                     V +IPYFRG ++++AKFH+TVGHETVM  L+FF       D   +  +  
                     VSRIPYFRGEIKSRAKFHLTVGHETVMATLQFFRSVGPGEDPHGLASTA 
gi|298517478|gb-1039 gtcacttcggaatcgatccaggcgagagaccttctggcgggccgcgtag 
                     tcgtcatggatacgcatatctgaacttcctattgctgcgaacagtcccc 
                     cgcccctccgcggctgcccccccgtcgcgcgccccccgcgcgccctgcc 


eEFsec           368 NFSQEYLFQEQYLSKDLTPAVT-----DNDEADKKAGQATEGH-CPRQQ 
                     + S      +   + D  P        D++  D    +  E +       
                     SSSSAASSSDAASAADSAPHPAHVFSYDDEYLDVSELEGPEAYPTGSTT 
gi|298517478|gb -892 atttggattgggtgggtgcccgcgtttgggtcggagcggcggtcagtaa 
                     gcccccgccacccccacccaccattcaaaaatatgatagcacaccgccc 
                     caggcccagttggcctgggtcgcccccccgcacgcgcgtcgacgacggg 


eEFsec           411 WALVEFEKPVTCPRLCLVIGSRLDADIHTNTCRLAFHGILLHGLEDRNY 
                     +A++E+E PV C    ++IGSRLD+D+  N CRLAF G L+         
                     YAVLELESPVLCAPDAMIIGSRLDSDVDGNVCRLAFSGSLVAPF----- 
gi|298517478|gb -745 tggcgcgtcgctgcggaaagtccgaggggagtccgttgtcggct      
                     acttataccttgccactttgcgtagatagatggtctcgcttcct      
                     cggtgcgaccccgtccgactggccccccacgcggccgcgggtgt      


eEFsec           460 ADSFLP-RLKVYKLKHKHGLVERAMDDYSVIGRSLFKKETNIQLFVGLK 
                      DS  P  LK++++K K G + R  ++   I + LF K T+  ++ GLK 
                     -DSDTPWALKIFRVKAKVGHITRLKNEREAICKGLF!KGTDPGVYTGLK 
gi|298517478|gb -613  gagactgcaatcgagaggcaaccaagcggatagct2agagcggtagca 
                      agaccgctattgtacatgatcgtaaagactgagtt agcacgtacgta 
                      cccaggacgcctcgcgcgcccgcgcgcgcccgccc gcgcgcgccgcg 


eEFsec           508 V-HLSTGELGIIDSAFGQSGKFKIHIPGGLSPESKKILT           
                     V   + G +G+I   FG S K+ + + GG   +++  +T           
                     VVSAANGGIGVIQGRFGASNKMNVFFSGGGQTDARAAVT           
gi|298517478|gb -470 ggtggaggaggacgctggtaaaagtttgggcaggcggga           
                     ttcccaggtgttaggtgccaatatttcgggacacgcctc           
                     acggccccccccgcctccccggccccctcggctcccccc           


//
>gi|298517478|gb|GL349496.1|:subseq(54000,2500).pep
ASRVLNVNVGLLGHVDSGKTSLAKALSTLASTAAFDKHPQSQVRGITLDLGFSALRVPLP
PALAGLRLDGHDDGTPDICSGTTSGNDTGDHPGKEDESGLLTVGDKYDEIQFTLVDCPGH
ASLIKTIIGGASIIDIMVLVVDAKAGFQTQTAECLVIGELTADTLMVALNKIDLFPEEKR
ASKVAKMTKRVAATLKPTAFANSDILPVSASSGDGLSDLVDALTAAVRLPTRNEAEDAFL
FAIDHCFQVKGQGTVVTGTIQRGSVAVGQTIEFPALGLSKKVKSMQMFKAPVERAVQGDR
LGICVAQLNAKLLERGLACAPGTIRAVSAAVVRVSRIPYFRGEIKSRAKFHLTVGHETVM
ATLQFFRSVGPGEDPHGLASTASSSSAASSSDAASAADSAPHPAHVFSYDDEYLDVSELE
GPEAYPTGSTTYAVLELESPVLCAPDAMIIGSRLDSDVDGNVCRLAFSGSLVAPFDSDTP
WALKIFRVKAKVGHITRLKNEREAICKGLFXKGTDPGVYTGLKVVSAANGGIGVIQGRFG
ASNKMNVFFSGGGQTDARAAVT
//
>gi|298517478|gb|GL349496.1|:subseq(54000,2500).[2038:507].sp
GCGAGTCGTGTGCTCAACGTCAACGTGGGCCTTCTCGGACACGTCGACTCGGGCAAGACG
TCACTAGCCAAGGCACTCTCCACACTCGCTTCAACGGCTGCCTTTGACAAACACCCTCAA
TCCCAAGTCAGAGGCATCACCCTCGACCTCGGCTTCTCTGCCCTTCGTGTACCTCTCCCG
CCAGCCCTCGCTGGCCTCCGACTCGATGGGCATGATGATGGTACTCCTGACATCTGTTCC
GGTACTACATCCGGCAATGATACCGGTGATCATCCCGGAAAAGAGGACGAGTCGGGCTTG
TTGACGGTCGGCGACAAGTACGATGAGATTCAGTTTACCCTCGTTGACTGCCCTGGACAC
GCCTCGCTGATCAAGACCATCATCGGCGGCGCCTCCATCATCGACATCATGGTCCTGGTG
GTCGACGCCAAGGCAGGCTTCCAGACGCAGACCGCAGAGTGTCTGGTCATCGGCGAGCTG
ACAGCAGACACACTCATGGTCGCCCTCAACAAGATCGATCTCTTTCCCGAAGAGAAGCGG
GCGAGCAAGGTGGCCAAGATGACCAAGCGGGTGGCGGCGACGCTCAAGCCGACAGCCTTT
GCAAATTCAGACATCCTCCCGGTCTCGGCATCGAGTGGTGATGGCCTCAGCGACCTCGTC
GACGCCCTCACTGCCGCCGTCCGCCTCCCGACCCGCAACGAAGCCGAGGACGCGTTCCTC
TTTGCCATCGACCACTGCTTCCAGGTCAAGGGCCAGGGCACTGTTGTGACCGGGACCATC
CAGCGCGGCTCGGTTGCCGTGGGGCAGACCATCGAGTTCCCGGCGCTCGGCCTGTCCAAG
AAGGTCAAGTCGATGCAGATGTTCAAGGCACCGGTCGAGCGAGCCGTCCAGGGCGACCGC
CTCGGCATCTGCGTGGCCCAGCTCAACGCCAAGCTCCTCGAGCGCGGCCTCGCCTGCGCC
CCAGGCACCATCCGCGCCGTCTCGGCCGCCGTCGTCCGCGTCTCGCGCATCCCCTACTTT
CGCGGCGAGATCAAGTCGCGCGCTAAGTTCCACCTCACCGTCGGCCACGAGACTGTCATG
GCCACGCTCCAGTTCTTCCGCTCCGTCGGCCCGGGCGAGGACCCGCACGGCCTCGCTTCG
ACCGCCAGCTCATCGTCGGCCGCCAGCTCATCGGATGCTGCGTCGGCCGCCGATTCGGCG
CCGCATCCCGCGCACGTCTTCTCCTACGACGACGAGTACCTAGACGTGAGCGAGCTCGAG
GGTCCCGAGGCATACCCGACAGGCTCGACGACGTACGCGGTGCTTGAGCTCGAGTCACCC
GTCCTCTGCGCGCCTGACGCCATGATAATCGGTTCGCGGCTCGACAGCGACGTCGACGGA
AACGTGTGCCGGCTGGCCTTCTCGGGCTCGCTGGTGGCTCCGTTTGACAGCGACACACCG
TGGGCACTCAAGATCTTCCGTGTCAAGGCCAAGGTCGGGCACATCACCCGGCTCAAGAAC
GAGCGCGAGGCCATCTGCAAGGGCCTCTTC
>gi|298517478|gb|GL349496.1|:subseq(54000,2500).[506:352].sp
AAGGGCACGGACCCGGGCGTGTACACCGGGCTCAAGGTAGTCTCGGCGGCCAACGGCGGC
ATCGGCGTCATCCAGGGCCGCTTTGGCGCCTCCAACAAGATGAACGTCTTCTTCTCCGGT
GGCGGGCAGACCGATGCCCGCGCCGCCGTCACC
//
gi|298517478|gb|GL349496.1|:subseq(54000,2500)	GeneWise	match	2038	509	476.75	-	.	gi|298517478|gb|GL349496.1|:subseq(54000,2500)-genewise-prediction-1
gi|298517478|gb|GL349496.1|:subseq(54000,2500)	GeneWise	cds	2038	509	0.00	-	0	gi|298517478|gb|GL349496.1|:subseq(54000,2500)-genewise-prediction-1
gi|298517478|gb|GL349496.1|:subseq(54000,2500)	GeneWise	match	506	354	26.53	-	.	gi|298517478|gb|GL349496.1|:subseq(54000,2500)-genewise-prediction-2
gi|298517478|gb|GL349496.1|:subseq(54000,2500)	GeneWise	cds	506	354	0.00	-	0	gi|298517478|gb|GL349496.1|:subseq(54000,2500)-genewise-prediction-2
//