TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Aureococcus anophagefferens (108 letters) Database: P.ultimum/genome.fa 82 sequences; 42,801,618 total letters Searching.................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL376629.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 50 4e-07 gb|GL376596.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 29 0.80 gb|GL376571.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 28 1.4 gb|GL376610.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 28 1.8 gb|GL376585.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 28 1.8 gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 27 2.3 gb|GL376631.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 27 3.1 gb|GL376635.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 27 4.0 gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 27 4.0 gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 26 6.8 gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 25 8.9 gb|GL376626.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 25 8.9 gb|GL376609.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 25 8.9 gb|GL376605.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 25 8.9 gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 25 8.9 >gb|GL376629.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582032, whole genome shotgun sequence Length = 863081 Score = 49.7 bits (117), Expect = 4e-07 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 26/112 (23%) Frame = +3 Query: 2 CKAAGFNPETLKCGLCERLSDY------------------HLETLLTDCLQCCIK-EEEF 42 C+ GF+ ETL C C+ LS + + L DC +CC + Sbjct: 522504 CRDLGFDAETLDCRRCDELSTFLSTSASTSDGDDSAAASKARDALQADCAKCCQDLSAKG 522683 Query: 43 KH-------EKYPTAILEVCECNLARFPQVQAFVHKDMARQFPQVALKDADF 87 H +KY +LEVC C R+P++ FVH+ A++ Q+ +K ++ Sbjct: 522684 LHAIGGTAGDKYARVVLEVCTCKFGRYPKIANFVHQH-AQKHAQLEIKACNY 522836 >gb|GL376596.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581981, whole genome shotgun sequence Length = 580909 Score = 28.9 bits (63), Expect = 0.80 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +2 Query: 24 HLETLLTDCLQCCIKEEEFKHEKYPTA 50 HL+ + CL CC++ E HE P A Sbjct: 47279 HLKYYIPPCLFCCVRSFEMAHEGAPMA 47359 >gb|GL376571.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581381, whole genome shotgun sequence Length = 502691 Score = 28.1 bits (61), Expect = 1.4 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Frame = +1 Query: 20 LSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLA-RFPQVQAFVHKDMARQFP 78 + + L+ L DC I E++ A E+ E LA + +Q V + +Q P Sbjct: 428086 IENMELDHFLQDCNFPVILSFPGNEERH--AKREIMELELASKHTALQRVVSNLLEKQMP 428259 Query: 79 QVALKDADFKTKEVLSVEKWDTDTLIDFFN 108 L A+ ++ V+ WD DT+ FF+ Sbjct: 428260 ---LAQANCLVGRIIFVDTWDRDTIPAFFH 428340 >gb|GL376610.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582013, whole genome shotgun sequence Length = 390037 Score = 27.7 bits (60), Expect = 1.8 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%) Frame = +3 Query: 5 AGFNPETLKCGLCERL---SDYHLETLLTDCLQCCIKEEEFKHEKY 47 AG+ + CG CERL D L ++ L C I+ + K Y Sbjct: 284811 AGYIRLLVACGFCERLLTILDLLLFVIIASILNCAIRRSQTKTSHY 284948 >gb|GL376585.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581789, whole genome shotgun sequence Length = 837833 Score = 27.7 bits (60), Expect = 1.8 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +1 Query: 9 PETLKCGLCERLSDYHLETLLTDCLQC 35 P L C +C R+ D++ +L D L C Sbjct: 17563 PADLPCEICNRVDDHYSNLILCDGLDC 17643 >gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581402, whole genome shotgun sequence Length = 979788 Score = 27.3 bits (59), Expect = 2.3 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +1 Query: 11 TLKCGLCERLSDYHLETLLTDCLQCCI 37 TL C +C R+S Y + +DC C+ Sbjct: 385735 TLYCAICRRISSYLSSSCSSDCSANCL 385815 >gb|GL376631.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582034, whole genome shotgun sequence Length = 1169325 Score = 26.9 bits (58), Expect = 3.1 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Frame = +2 Query: 18 ERLSDYHLETL--LTDCLQCCIKEEEFKHEKYPTAI 51 ERL+ +H+ L C+ CC E +HE PT I Sbjct: 76193 ERLAVHHVRLAADLGTCVLCCDDNLEVRHEIKPTGI 76300 Score = 25.4 bits (54), Expect = 8.9 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +2 Query: 63 PQVQAFVHKDMARQFPQV--ALKDADFKTKEVLSVEKWDTDT 102 P V +F+ QFPQV +L K+ EVL V+ WD ++ Sbjct: 717665 PHVASFL-----AQFPQVRASLPQESPKSAEVLCVKPWDIES 717775 >gb|GL376635.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582038, whole genome shotgun sequence Length = 913258 Score = 26.6 bits (57), Expect = 4.0 Identities = 10/31 (32%), Positives = 14/31 (45%) Frame = -2 Query: 6 GFNPETLKCGLCERLSDYHLETLLTDCLQCC 36 GF ET CG C + + + C+ CC Sbjct: 689850 GFGRETAPCGSCHSYPHWLMCWRMWGCISCC 689758 >gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582028, whole genome shotgun sequence Length = 960197 Score = 26.6 bits (57), Expect = 4.0 Identities = 13/50 (26%), Positives = 22/50 (44%) Frame = +2 Query: 48 PTAILEVCECNLARFPQVQAFVHKDMARQFPQVALKDADFKTKEVLSVEK 97 P +C C +A FPQ +H R FP + +K+ + ++K Sbjct: 567452 PAHCTSICRCEMAPFPQ----IHHQFPRGFPTHPSESNGAFSKKSIFIQK 567589 Score = 25.8 bits (55), Expect = 6.8 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -2 Query: 38 KEEEFKHEKYPTAILEVCECNLAR 61 +++ F HEKYP A+L +L+R Sbjct: 500089 RDQTFAHEKYPLAVLTRAPGSLSR 500018 >gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582020, whole genome shotgun sequence Length = 790859 Score = 25.8 bits (55), Expect = 6.8 Identities = 18/68 (26%), Positives = 31/68 (45%) Frame = -2 Query: 23 YHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARFPQVQAFVHKDMARQFPQVAL 82 +H++ + C C++ + +L V LA P+ F+H D ARQ L Sbjct: 251947 FHVQPFVFQCALLCLR----------SLVLVVDLLVLASKPRFVDFIHGDFARQ-----L 251813 Query: 83 KDADFKTK 90 +D D K++ Sbjct: 251812 QDFDAKSR 251789 >gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582041, whole genome shotgun sequence Length = 1261388 Score = 25.4 bits (54), Expect = 8.9 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +2 Query: 3 KAAGFNPETLKCG 15 KAAGF+P+T CG Sbjct: 4529 KAAGFDPKTFNCG 4567 >gb|GL376626.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582029, whole genome shotgun sequence Length = 1550222 Score = 25.4 bits (54), Expect = 8.9 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +3 Query: 83 KDADFKTKEVLSVEKWDTDTLID 105 K+++ + K VLS+ W TD ++D Sbjct: 268020 KNSEVRNKSVLSIRFWVTDHILD 268088 >gb|GL376609.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582012, whole genome shotgun sequence Length = 298282 Score = 25.4 bits (54), Expect = 8.9 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%) Frame = +3 Query: 16 LCERLSDYHLETL---LTDCLQCCIKEEEFKHEKYPTAIL 52 L R + H+ L L CLQCCI F++ + +L Sbjct: 63102 LAPRRNRLHVRVLVH*LKRCLQCCIGAARFEYHDHQLRVL 63221 >gb|GL376605.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582008, whole genome shotgun sequence Length = 1405322 Score = 25.4 bits (54), Expect = 8.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -3 Query: 29 LTDCLQCCIKEEEFKHEKYPTAIL 52 LT CC EEE ++ + P IL Sbjct: 1279773 LTSAAACCSNEEEHRYAEQPQVIL 1279702 >gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581354, whole genome shotgun sequence Length = 1199448 Score = 25.4 bits (54), Expect = 8.9 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 Query: 21 SDYHLETLLTDCLQCCIKEEEFKH 44 ++Y + L +QCCIKEE H Sbjct: 322174 NEYRFASDLNIVVQCCIKEERSDH 322245 Database: P.ultimum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 42,801,618 Number of sequences in database: 82 Lambda K H 0.324 0.137 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,624,583 Number of Sequences: 82 Number of extensions: 102394 Number of successful extensions: 658 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 610 Number of HSP's gapped (non-prelim): 122 length of query: 108 length of database: 14,267,206 effective HSP length: 83 effective length of query: 25 effective length of database: 14,260,400 effective search space: 356510000 effective search space used: 356510000 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 54 (25.4 bits)