TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Aureococcus anophagefferens (108 letters) Database: H.arabidopsidis/genome.fa 5422 sequences; 67,459,135 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABWE01000021.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 30 0.73 gb|ABWE01000124.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 28 1.6 gb|ABWE01000287.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 28 2.8 gb|ABWE01002163.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 27 3.6 gb|ABWE01001787.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 27 3.6 gb|ABWE01000298.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 27 4.7 gb|ABWE01002503.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 27 6.2 gb|ABWE01001171.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 26 8.1 gb|ABWE01000650.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 26 8.1 gb|ABWE01000494.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 26 8.1 >gb|ABWE01000021.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont33.8, whole genome shotgun sequence Length = 123966 Score = 29.6 bits (65), Expect = 0.73 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%) Frame = -1 Query: 25 LETLLTDCLQCCIKEEEFKHEKYPTAI------LEVCECNLA 60 ++T++ L CCI K+ T++ LE+CEC++A Sbjct: 8655 IDTIILSNLACCILNSPLKYLSVSTSLDRSVP*LEICECSVA 8530 >gb|ABWE01000124.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont29.18, whole genome shotgun sequence Length = 74557 Score = 28.5 bits (62), Expect = 1.6 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Frame = +1 Query: 27 TLLTDCLQCCIKEE------EFKHEKYPTAILEVCECNLARFPQVQAFVHKDMARQFPQV 80 T++ C QC + + K +YP A++ C C L P+ +A +H + + PQ Sbjct: 71386 TVVLICAQCLASDTYVAQFVQRKSHEYPHAVMSACRC-LTPKPKAEA-LHSGHSHELPQQ 71559 Query: 81 A 81 A Sbjct: 71560 A 71562 >gb|ABWE01000287.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont140.1, whole genome shotgun sequence Length = 53207 Score = 27.7 bits (60), Expect = 2.8 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +2 Query: 13 KCGLCERLSDYHLETLLTDCLQCCIK 38 KC LCER S H+ + C++C ++ Sbjct: 9743 KCRLCERESRQHVMEMSRSCVRCNVR 9820 >gb|ABWE01002163.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont623.1, whole genome shotgun sequence Length = 5128 Score = 27.3 bits (59), Expect = 3.6 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = +3 Query: 63 PQVQAFVHKDMARQFPQVALKDADFKTKEVLSVEKWDTDTL 103 PQ AF HKD R+ A + + SV +W T TL Sbjct: 3177 PQATAFQHKDG*RRERHAATRSSISPPSLAASVRRWRTKTL 3299 >gb|ABWE01001787.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont3.4, whole genome shotgun sequence Length = 9197 Score = 27.3 bits (59), Expect = 3.6 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = -3 Query: 27 TLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLA 60 +L TDC++ C++ + H Y +V C LA Sbjct: 4215 SLPTDCIELCVQRWQLAHGSYEVKRRDVGSCFLA 4114 >gb|ABWE01000298.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont2.37, whole genome shotgun sequence Length = 52400 Score = 26.9 bits (58), Expect = 4.7 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Frame = -2 Query: 16 LCERLSDYHLETLLTDCLQCCIKEEE-----FKHEKYPTAILEVCECNLAR 61 LC+R Y T C CC +E+ F+H +Y +L+VC ++ R Sbjct: 37501 LCDRSVRYTSRYFGTRCGTCCHGQEDVLPSTFQH-RYHVLVLDVCVVHVRR 37352 >gb|ABWE01002503.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont641.2, whole genome shotgun sequence Length = 3066 Score = 26.6 bits (57), Expect = 6.2 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = -2 Query: 3 KAAGFNPETLKCGLCERLSDYHLETLLTDCLQCCI 37 K AG + GL L+D+HL C CC+ Sbjct: 2648 KGAGVRCNRVSIGLFLYLADFHLNLPRVGCRGCCL 2544 >gb|ABWE01001171.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont386.1, whole genome shotgun sequence Length = 18176 Score = 26.2 bits (56), Expect = 8.1 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Frame = +2 Query: 12 LKCGLCERLSDYHLETLLTDC-LQCCIKEEEFKH-----EKYPTAILEVCECNLARFPQV 65 L+ LC+ LS +++++T C L+ + + + L +C ++ F + Sbjct: 4505 LRTSLCQLLSMLFMDSIVTSCKLRAATGTRQVRR*FIISSCWENICLNADDCRVSSFDSI 4684 Query: 66 QAFVHKDMARQ 76 + +VH M ++ Sbjct: 4685 RRYVHVGMGKR 4717 >gb|ABWE01000650.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont246.3, whole genome shotgun sequence Length = 32703 Score = 26.2 bits (56), Expect = 8.1 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = -2 Query: 32 CLQCCIKEEEFKHEKYPTAILEVCECN 58 C CC+ E F H + T L+VC N Sbjct: 5456 CRLCCVVEALFGHVEPATGELDVCRPN 5376 >gb|ABWE01000494.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont179.2, whole genome shotgun sequence Length = 39082 Score = 26.2 bits (56), Expect = 8.1 Identities = 7/21 (33%), Positives = 13/21 (61%) Frame = -2 Query: 52 LEVCECNLARFPQVQAFVHKD 72 L +C CN+ R+ + +HK+ Sbjct: 11004 LSICSCNIMRYGTISNIIHKE 10942 Database: H.arabidopsidis/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 67,459,135 Number of sequences in database: 5422 Lambda K H 0.324 0.137 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,086,276 Number of Sequences: 5422 Number of extensions: 153078 Number of successful extensions: 861 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 445 Number of HSP's successfully gapped in prelim test: 40 Number of HSP's that attempted gapping in prelim test: 369 Number of HSP's gapped (non-prelim): 568 length of query: 108 length of database: 22,486,378 effective HSP length: 83 effective length of query: 25 effective length of database: 22,036,352 effective search space: 550908800 effective search space used: 550908800 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 55 (25.8 bits)