TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Aureococcus anophagefferens (108 letters) Database: P.tricornutum/genome.fa 31 sequences; 23,733,684 total letters Searching...............................done Score E Sequences producing significant alignments: (bits) Value gb|CM000606.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 35 0.006 gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 29 0.45 gb|CM000619.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 0.76 gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 27 1.3 gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 27 1.7 gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 26 2.9 gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 25 4.9 gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 25 6.4 gb|CM000624.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 25 8.4 gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 25 8.4 >gb|CM000606.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 2, whole genome shotgun sequence Length = 1497954 Score = 35.0 bits (79), Expect = 0.006 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Frame = +1 Query: 22 DYHLETLLTDCLQCCIKEEEFKH---EKYPTAILEVCECNLARFPQVQAFVHKDMAR 75 +Y + ++T+C Q C+K + H K P L +C C+ A++ + Q + +D +R Sbjct: 1083502 EYCRKVVITNCKQSCLKNMLYTHSWQNKSPKIALLICNCS*AKYGRPQQILLRDRSR 1083672 Score = 26.2 bits (56), Expect = 2.9 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Frame = -3 Query: 41 EFKHEKYPTAILEVCECNLARFPQVQAFVHKDMAR-QFPQVALKDADFKTKE 91 +F H PT L + C +PQV+ + K + FP V + KE Sbjct: 1372420 KFNHSLQPTIRLPIRSCLSPSYPQVRVY*LKSPSHSMFPSVGISKLKMLQKE 1372265 >gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun sequence Length = 683011 Score = 28.9 bits (63), Expect = 0.45 Identities = 19/62 (30%), Positives = 25/62 (40%) Frame = -3 Query: 19 RLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARFPQVQAFVHKDMARQFP 78 +LS H T + C+ + KH P A +VCE NL R F H D P Sbjct: 141305 QLSHLHFRPHRTPAWKHCVHDYT-KHGLVPPAKCDVCEKNLGRRTSQYFFRHSDFLHLQP 141129 Query: 79 QV 80 + Sbjct: 141128 ML 141123 Score = 25.4 bits (54), Expect = 4.9 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = -1 Query: 13 KCGLCERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNL 59 +C +R L+++ D L C K H+ P A+L EC+L Sbjct: 493627 QCYFADRRP*R*LQSICPDHLHLCTKHFPKTHQHEPKALLLQYECSL 493487 >gb|CM000619.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 17, whole genome shotgun sequence Length = 703943 Score = 28.1 bits (61), Expect = 0.76 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Frame = -3 Query: 18 ERLSDYHLETLLTDCLQCCI---KEEEFKHEKYPTAILEVC 55 +RLS Y ++ D C+ E+KH YP ++ +C Sbjct: 265638 QRLSRYSVQAARLDPADECVVWLPRTEYKHTSYPVCLVRIC 265516 >gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome shotgun sequence Length = 1007773 Score = 27.3 bits (59), Expect = 1.3 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 29 LTDCLQCCIKEEEFKHEKYP-TAILEVCEC 57 L C++ C+++ E KH KYP +L + +C Sbjct: 292302 LEQCIKNCLRDLE*KHGKYPLDMVLSIPQC 292391 Score = 26.9 bits (58), Expect = 1.7 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +2 Query: 33 LQCCIKEEEFKHEKYPTAILEVCECNLARFPQ 64 L C + + +K +KYP I C C + R PQ Sbjct: 502727 LFCIVVQLHYKVDKYPEHIWVFCLCFMQRNPQ 502822 Score = 26.6 bits (57), Expect = 2.2 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = -1 Query: 10 ETLKCGLCERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVC 55 E++ CGL LET++ L+CC ++ K+ K PT++ C Sbjct: 483376 ESIFCGL-------QLETIM*--LRCCFRQNIPKNRKGPTSLASYC 483266 Score = 25.0 bits (53), Expect = 6.4 Identities = 12/40 (30%), Positives = 17/40 (42%) Frame = +1 Query: 5 AGFNPETLKCGLCERLSDYHLETLLTDCLQCCIKEEEFKH 44 A + P TL + +HL+ L C+ CC KH Sbjct: 854557 AAWTPTTLALRYVRGVHHHHLQ--LVSCIPCCTASNGTKH 854670 >gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 5, whole genome shotgun sequence Length = 1098047 Score = 26.9 bits (58), Expect = 1.7 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Frame = -1 Query: 4 AAGFNPETLKCGLC-----ERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECN 58 AA L GLC E D+HL T + DC Q C+ + ++ Y + + Sbjct: 802325 AANRRKPKLSPGLCLLLMEENELDFHL*TFIADCQQNCLIAKLLENPTYCVLPKQ*NSAS 802146 Query: 59 LARF 62 L RF Sbjct: 802145 LERF 802134 Score = 25.8 bits (55), Expect = 3.8 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Frame = -1 Query: 2 CKAA---GFNPETLKCGLCERLSDYHLETLLTD---CLQCCIKEEEFKHEKYPTAILEVC 55 CK+A G +P T+ G C +HL L + ++C H+K+PT+ + Sbjct: 965189 CKSAFLRGASP-TVPLGPCISYKPWHLLILSSRKAAAIRCVDTGRSLFHQKHPTSTKRLL 965013 Query: 56 ECNLARF 62 + L+RF Sbjct: 965012 KRKLSRF 964992 >gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 21, whole genome shotgun sequence Length = 662217 Score = 26.2 bits (56), Expect = 2.9 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -1 Query: 16 LCERLSDYHLETLLTDCLQC 35 +C RLS +H E L D +QC Sbjct: 70053 VCSRLSRHHSEVSLVDIVQC 69994 >gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 14, whole genome shotgun sequence Length = 829358 Score = 25.4 bits (54), Expect = 4.9 Identities = 12/44 (27%), Positives = 22/44 (50%) Frame = +1 Query: 18 ERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLAR 61 +R YH + C +++ E+ HE+ +++ CEC L R Sbjct: 531100 QRAVAYHRDC---PCSLLMVRQAEWVHERAISSLRSECECALTR 531222 >gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome shotgun sequence Length = 976485 Score = 25.0 bits (53), Expect = 6.4 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = -3 Query: 18 ERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAIL 52 ERLSD E L+ C+ + K YP A L Sbjct: 782008 ERLSDVPPECYPRQALRFCLPSSDQKSPSYPLAFL 781904 >gb|CM000624.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 22, whole genome shotgun sequence Length = 591336 Score = 24.6 bits (52), Expect = 8.4 Identities = 9/30 (30%), Positives = 17/30 (56%) Frame = +3 Query: 76 QFPQVALKDADFKTKEVLSVEKWDTDTLID 105 Q+P + D F TK ++ + W T T+++ Sbjct: 66411 QYPPTNIADTPFITKSSIAKKTWCTKTVVN 66500 >gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 6, whole genome shotgun sequence Length = 1035082 Score = 24.6 bits (52), Expect = 8.4 Identities = 10/36 (27%), Positives = 18/36 (50%) Frame = -2 Query: 63 PQVQAFVHKDMARQFPQVALKDADFKTKEVLSVEKW 98 P + ++ + P V K DF+ K +L+ E+W Sbjct: 957717 PWTMSSIYPRPQSRSPMVPSKRRDFRKKAILAQERW 957610 Database: P.tricornutum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 23,733,684 Number of sequences in database: 31 Lambda K H 0.324 0.137 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,587,839 Number of Sequences: 31 Number of extensions: 53280 Number of successful extensions: 331 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 292 Number of HSP's gapped (non-prelim): 121 length of query: 108 length of database: 7,911,228 effective HSP length: 83 effective length of query: 25 effective length of database: 7,908,655 effective search space: 197716375 effective search space used: 197716375 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 51 (24.3 bits)