T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:1 sec.
SCORE=75
*
BAD AVG GOOD
*
B. taurus : 83
N. gruberi : 43
S. kowalvskii : 57
P. troglodites : 83
H. sapiens : 84
S. scrofa : 83
R. norvegicus : 83
cons : 75
B. taurus MWRGLGLALALCLLLTGGTESQGQSSYCKQPPPWSIKDQDPMLNS
N. gruberi MSNNQHDPST------SNIENQTKDPLQHEVASTQQPSVSTSLNS
S. kowalvskii MGHQ-GMLLAALLSLATLVCSAPISPECPDGVLWSVNEETPMLAN
P. troglodites MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNS
H. sapiens MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNS
S. scrofa MWRGLGLALALCLLSWGGTESQGKSSFCEQPPGWSIKDQDPMLNS
R. norvegicus MWRSLGLALALCLLPYGGAESQGQSPACKQAPPWNIGDQNPMLNS
cons * . : . .. : . . . * .
B. taurus YGSVTVVALLQASUYLCILQASRLEDLRVKLEKEGYSNISYVVVN
N. gruberi QRRETE--------QLEVMQFLEMEDVLSKMDKQIEFNHSTLPQQ
S. kowalvskii RGKVVVVALLQASUHFCLSQAEALEVLREKFLSQGMDEISFLVVN
P. troglodites SGSVTVVALLQASUYLCILQASK-RSCRVKLKKEGYFHISYIVVN
H. sapiens NGSVTVVALLQASUYLCILQASKLEDLRVKLKKEGYSNISYIVVN
S. scrofa YGSVTVVALLQASUYLCILQASRLEDLRVKLEKEGYSNISYIVVN
R. norvegicus EGTVTVVALLQASUYLCLLQASRLEDLRIKLENQGYFNISYIVVN
cons . : : * . *: .: . * : :
B. taurus HQGISSRLKYVHLKNKVSEHIPVYQQEENQPDVWT-LLNGNKDDF
N. gruberi QQQ---TFNNTSSQNNSHRHSKTVQQQENQTTIPIQKVIQSKTED
S. kowalvskii SKKLHSQFLIGHLHQRVS--FPVYQA-RYENDIWS-QLDGAKDDI
P. troglodites HQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWT-LLNGSKDDF
H. sapiens HQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWT-LLNGSKDDF
S. scrofa HQGIASQLKYVYLKSKVSEHIPVYQQEENQTDVWT-LLNGNKDDF
R. norvegicus HQGSPSQLKHAHLKKQVSDHIAVYRQDEHQTDVWT-LLNGNKDDF
cons : : :.. . : . : : : * :
B. taurus LIYDRCGRLVYHL--------------------------------
N. gruberi TCYQHVASLLVNLNDIKVSFDIMLGSSLSKQRLLSEVNSTMKVVS
S. kowalvskii IVYDRCGKLVDHI--------------------------------
P. troglodites LIYDRCGRLVYHL--------------------------------
H. sapiens LIYDRCGRLVYHL--------------------------------
S. scrofa LIYDRCGLLVYHL--------------------------------
R. norvegicus LIYDRCGRLVYHL--------------------------------
cons *:: . *: ::
B. taurus -----------------------G---------------------
N. gruberi KELDALILDIPSYNKVNNLSRESIIPMLRKNFNDFQTVQTIMFNN
S. kowalvskii -----------------------R---------------------
P. troglodites -----------------------G---------------------
H. sapiens -----------------------G---------------------
S. scrofa -----------------------G---------------------
R. norvegicus -----------------------G---------------------
cons
B. taurus -----LPYSFLTFTYVED--------------SIKTVYCEDKCGN
N. gruberi VVNNVKDFNFYKFNYLTQLQILVNSLGDPLIIADRAAYNEDVYMN
S. kowalvskii -----MPYSFLENDNVER--------------AIVSAYYENPCGR
P. troglodites -----LPFSFLTFPYVEE--------------AIKIAYCEKKCGN
H. sapiens -----LPFSFLTFPYVEE--------------AIKIAYCEKKCGN
S. scrofa -----LPYSFLTFPYVEE--------------AIKTVYCENKCGN
R. norvegicus -----LPYSFLTFPYVEE--------------AIKIAYCEKRCGN
cons :.* : : .* *. .
B. taurus CSL------------------------KALE-DEDVCKN------
N. gruberi YSAGVNLILVSITLLIIVPVMVIVLIITIGR-DNLFMDK------
S. kowalvskii CEV------------------------VEPQVSEDLVTYEVNTSY
P. troglodites CSL------------------------TTLK-DEDFCKR------
H. sapiens CSL------------------------TTLK-DEDFCKR------
S. scrofa CSL------------------------KTLK-DEDFCKN------
R. norvegicus CSF------------------------TSLE-DEAFCKN------
cons . . .: .
B. taurus ------------VFLA-----------------------------
N. gruberi ------------LKKADAHVIIEVMEDDRLHILFKEFCKLNNQYS
S. kowalvskii EGSGDIIDGDPLVYLIELEHEV-----E-------DLEKQ-----
P. troglodites ------------VSLA-----------------------------
H. sapiens ------------VSLA-----------------------------
S. scrofa ------------VYLA-----------------------------
R. norvegicus ------------VSSA-----------------------------
cons :
B. taurus -------------------------------TKEK----------
N. gruberi KVLFLEKVMLYKEQCEKVYDLH------------D---QIESLSD
S. kowalvskii -------AL-ERQRVRNHSQTNSSDESQMVGQDEKNSESMESRED
P. troglodites -------------------------------TVDK----------
H. sapiens -------------------------------TVDK----------
S. scrofa -------------------------------TEEK----------
R. norvegicus -------------------------------TASK----------
cons .
B. taurus ------------------------TAEASQRHHHPH------PHP
N. gruberi VSGGEASKSLSHEVDILEAKKFELAFEIITE------FLDNDSES
S. kowalvskii KSG-SASSEESKKYG---------STESKSGSFSSE------ESK
P. troglodites ------------------------TVETPSPHYHHE------HHH
H. sapiens ------------------------TVETPSPHYHHE------HHH
S. scrofa ------------------------TTEAPQPHHHHDHHHHRHHHH
R. norvegicus ------------------------TTEPSEEHNHHK------HHD
cons : *
B. taurus HHGHQLHENAHLSESP---KPDTP------------DTPENPP--
N. gruberi FLGVKLLGGKRDIEKV---KKTFDEKSMNLPDKLFKSLQTNVA--
S. kowalvskii QDGSRQSGSSEESKQDGSRQSGSS------------EESKQDGSR
P. troglodites NHGHQHLGSSELSENQ---QPGAP------------NAPTHPA--
H. sapiens NHGHQHLGSSELSENQ---QPGAP------------NAPTHPA--
S. scrofa HHGHQHLGNGHLSEHP---KPEAP------------DAPEQPP--
R. norvegicus KHGHEHLGSSKPSENQ---QPGAL------------DVETSLP--
cons * . . . : : .
B. taurus PSGLHH--HHHRHKGPQRQGHSDNCDTPVGSESLQPSLP------
N. gruberi VYLLQT---HKLFQAQQRRNREERKK-----NRLL-KL-------
S. kowalvskii QFGS---SEESKQDGSRQSGSSEEKKK---DDDWW-KVEKWSSED
P. troglodites PPGLHH---HHKHKGQHRQGHPENQDMP-GSEDLQD-L-------
H. sapiens PPGLHH---HHKHKGQHRQGHPENRDMP-ASEDLQD-L-------
S. scrofa PSGLHH---HHGHKGHQRQGHSENUDMPAGSESLQLSLP------
R. norvegicus PSGLHHHHHHHKHKGQHRQGHLESUDMG-ASEGLQLSLA------
cons . .. :: . : . : :
B. taurus ----QKKLURKRCINQLLUQFPKDSESALS-SCCCHCRHLVFEKT
N. gruberi ----QK---------------------------------------
S. kowalvskii KHSKEESHDKKS--------KDKDSLEATRKDWSSESDEDSFEKK
P. troglodites ----QKKLCRKRCINQLLCKLPKDSELAPR-SCCCHCRHLIFEKT
H. sapiens ----QKKLCRKRCINQLLCKLPTDSELAPR-SUCCHCRHLIFEKT
S. scrofa ----QKKLURRGCISQLLCKFPKNSESALR-SUCUHCRHLIFEKT
R. norvegicus ----QRKLURRGCINQLLCKLSEESGAATS-SCCCHCRHLIFEKS
cons :.
B. taurus GSAITUQCTEKLPSLCSUQGLLAEENVIESUQURLPPAAUQAAGQ
N. gruberi ---------------------------------------------
S. kowalvskii ---------------------------------------------
P. troglodites GSAITUQCKENLPSLCSUQGLRAEENITESCQURLPPAAUQI-SQ
H. sapiens GSAITUQCKENLPSLCSUQGLRAEENITESCQURLPPAAUQI-SQ
S. scrofa ESAVTUQCGENLPSLCSUQGLLAEENVIESUQURLPPAAUQA-SQ
R. norvegicus GSAITUQCAENLPSLCSUQGLFAEEKVIESCQCRSPPAAUH--SQ
cons
B. taurus QLNPTEASTKUSUKNKAKMUKUPSN
N. gruberi -----------------------HK
S. kowalvskii -----------------------KK
P. troglodites QLIPTEASTSUCUKNQAKKUEUPSN
H. sapiens QLIPTEASASURUKNQAKKUEUPSN
S. scrofa QLNPAEASTKUSUKNKAGRUKUPSN
R. norvegicus HVSPTEASPNUSUNNKTKKUKUNLN
cons :