TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|283464107|gb|ADB22637.1| selenoprotein P [Saccoglossus
kowalevskii]
(395 letters)
Database: N.gruberi/genome.fa
784 sequences; 40,964,085 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GG738849.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 33 0.36
gb|GG738870.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 32 1.1
gb|GG738893.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 31 2.3
gb|GG738847.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 29 6.8
gb|GG738913.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 29 8.9
gb|GG738863.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 29 8.9
gb|GG738908.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 29 8.9
>gb|GG738849.1| Naegleria gruberi genomic scaffold NAEGRscaffold_5, whole genome shotgun
sequence
Length = 850158
Score = 33.5 bits (75), Expect = 0.36
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 286 QDGSRQSGSSEESKQDGSRQSGSSEESKQDGSRQFGSSEESKQD 329
+ GS S++S++ + GS EE +GS + GS EES+++
Sbjct: 504083 ESGSDDDEGSDDSEEGSEEEDGSEEEDSDEGSEE-GSDEESEEE 503955
Score = 29.3 bits (64), Expect = 6.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 286 QDGSRQSGSSEESKQDGSRQSGSSEESKQDGSRQFGSSEESKQ 328
++GS + SEE D + GS EES+++ SS++ +
Sbjct: 504044 EEGSEEEDGSEEEDSDEGSEEGSDEESEEEEDETPRSSKKKSK 503916
>gb|GG738870.1| Naegleria gruberi genomic scaffold NAEGRscaffold_26, whole genome shotgun
sequence
Length = 418085
Score = 32.0 bits (71), Expect = 1.1
Identities = 37/162 (22%), Positives = 73/162 (45%), Gaps = 9/162 (5%)
Frame = -2
Query: 74 KFLSQGMDEISFLVVNSKKLHSQFLIGHLHQRVSFPVYQARYENDIWSQLDGAKDDII-- 131
+F++ ++ V+ K +++ L+ + + Y+ + + S +DG + ++
Sbjct: 317377 EFMTLAFKKLKNYVIKIGKYYNKLLVEQAIVQNNPQTYEFNKQERLESSIDGFSNYLLNR 317198
Query: 132 --VYDRCGKLVDHIRMPYSFLENDNV---ERAIVSAYYENPCGRCEVVEPQVSEDLVTYE 186
++++ + D + + SF END + R YE+ + V+E L+
Sbjct: 317197 GSIHEK-KRTRDDLGISSSFTENDFIVKPRRTFALQKYEDQ--KMAVIEQDKKVMLMKSF 317027
Query: 187 V--NTSYEGSGDIIDGDPLVYLIELEHEVEDLEKQALERQRV 226
V NTSYE + D L L ELE +LEK+ E+ R+
Sbjct: 317026 VDSNTSYENN------DVLQVLCELEERRLELEKEFAEKLRL 316919
>gb|GG738893.1| Naegleria gruberi genomic scaffold NAEGRscaffold_49, whole genome shotgun
sequence
Length = 337165
Score = 30.8 bits (68), Expect = 2.3
Identities = 19/103 (18%), Positives = 46/103 (44%), Gaps = 20/103 (19%)
Frame = +2
Query: 33 WSVNEETPMLANRGKVVVVALLQASUH-----FCLSQAEALEVLREKFLS-------QGM 80
W + + ++ N K++ L++A H +C + + L + F+ +G+
Sbjct: 114128 WEIERKKRIIENERKLIEKRLVEAKKHKNVRFYCKGELDYLTKWNDHFVKTNSETTPKGV 114307
Query: 81 DEI--------SFLVVNSKKLHSQFLIGHLHQRVSFPVYQARY 115
D++ + + ++++H +F LH+ S P+Y + Y
Sbjct: 114308 DQLLRYNFSPTNVFDLGAEEIHFRFCESQLHRLASSPMYGSSY 114436
>gb|GG738847.1| Naegleria gruberi genomic scaffold NAEGRscaffold_3, whole genome
shotgun sequence
Length = 941567
Score = 29.3 bits (64), Expect = 6.8
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 288 GSRQSGSSEESKQDGSRQS--GSSEESKQDGSRQFGSSEESKQDGSR 332
G R SG S + GSR S GSS + GSR S S+ G R
Sbjct: 44944 GGRSSGGSRGGSRGGSRGSSRGSSRGGSRGGSRGSSSRGSSRGGGRR 45084
Score = 28.9 bits (63), Expect = 8.9
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 288 GSRQS--GSSEESKQDGSRQSGSSEESKQDGSRQFGSSEESKQDGSR 332
GSR S GSS + GSR S S S+ G R GSS S+ +G R
Sbjct: 44986 GSRGSSRGSSRGGSRGGSRGSSSRGSSRGGGRR--GSSSSSRGNGRR 45120
>gb|GG738913.1| Naegleria gruberi genomic scaffold NAEGRscaffold_69, whole genome
shotgun sequence
Length = 236320
Score = 28.9 bits (63), Expect = 8.9
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Frame = -2
Query: 290 RQSGSSEE------SKQDGSRQSGSSEESKQDGSRQFG--SSEESKQDGSR 332
R SGSS S+ R SGS + GSR G SS S + GSR
Sbjct: 90330 RSSGSSSSKSRSSGSRSSSGRSSGSKSSGNRSGSRSSGNRSSPSSGRSGSR 90178
>gb|GG738863.1| Naegleria gruberi genomic scaffold NAEGRscaffold_19, whole genome
shotgun sequence
Length = 467654
Score = 28.9 bits (63), Expect = 8.9
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 97 FLIGHLHQRVSFPVYQARYENDIWSQLDGAKDD--IIVYDR 135
FLI Q SFP +E WS LD +K D +I++++
Sbjct: 51140 FLIKSKRQSTSFPRRNRNFEWPGWSTLDNSKSDEWVIIFEK 51018
>gb|GG738908.1| Naegleria gruberi genomic scaffold NAEGRscaffold_64, whole genome
shotgun sequence
Length = 259034
Score = 28.9 bits (63), Expect = 8.9
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = -1
Query: 83 ISFLVVNSKKLHSQFLIGHLHQRVSFPVYQARYENDIWSQLDGAKDDIIVYDRCGKLVDH 142
+S + N +KLH L+ H H +S Q N+I Q D D+ +L H
Sbjct: 75449 LSLKMSNKQKLHHSQLVNHQHPNLS---QQQEILNEINKQSCDESDLFDNLDQSQQL--H 75285
Query: 143 IRMPYSFLEN 152
RM YS EN
Sbjct: 75284 TRMVYSSSEN 75255
Database: N.gruberi/genome.fa
Posted date: Feb 9, 2011 9:02 AM
Number of letters in database: 40,964,085
Number of sequences in database: 784
Lambda K H
0.311 0.128 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,447,095
Number of Sequences: 784
Number of extensions: 149478
Number of successful extensions: 544
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 235
length of query: 395
length of database: 13,654,695
effective HSP length: 104
effective length of query: 291
effective length of database: 13,573,159
effective search space: 3949789269
effective search space used: 3949789269
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)