TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|302129654|ref|NP_001180474.1| selenoprotein U [Oryzias
latipes]
         (212 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.4 of Capsaspora owczarzaki ATCC 30864                    67   1e-11
supercontig_1.1 of Capsaspora owczarzaki ATCC 30864                    28   5.5  

>supercontig_1.4 of Capsaspora owczarzaki ATCC 30864
          Length = 2141673

 Score = 66.6 bits (161), Expect = 1e-11
 Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 10/190 (5%)
 Frame = -3

Query: 31      ANASLEFLEEADLRCTLDHTKVIKAKSLWDKNGAVVMAVRRPGUFLCREEASELSSLKPQ 90
               A+ +++ LE AD        K +    +W     +++ +RR G  LC E+AS +  +KPQ
Sbjct: 1144336 ASNNIKVLELAD-------KKELVLADMWKDQRVLLILLRRFGCSLCHEQASHVLEIKPQ 1144178

Query: 91      LEELGVPLVAV------VKENLGSEIQDFRPHFAGDIYIDEEKRFYGPL-QRRMGGLGFI 143
               L+  GV +V V        E     +      F  ++YID E+  Y     +R+G L F+
Sbjct: 1144177 LDAAGVKIVLVGTGNRYFAEKFIENVPGNGQRFPAEVYIDPEQTAYKARGLQRVGLLHFL 1143998

Query: 144     RIGVWQNFIRAWKSGYQGNMNGEGFILGGVYVIGAGEQGII---LEHREKQFGDKVDTAD 200
                      + +A K+    ++ G+G   GG+Y++G G    I       +   G  VD   
Sbjct: 1143997 SWTAISEWRKANKNHPNADLQGDGLQTGGIYLVGPGADSAIHFAFNEYDHPVGTLVDNDQ 1143818

Query: 201     VLKAIQKIVP 210
               +L A++   P
Sbjct: 1143817 ILAAVKATQP 1143788


>supercontig_1.1 of Capsaspora owczarzaki ATCC 30864
          Length = 3794667

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
 Frame = +2

Query: 94      LGVPLVAVVKENLGSEIQDFRPHFAGDIYIDEEKRFYGPLQRRMGGLGFIRIGVWQNFIR 153
               LG  +VAVV+  +   ++  R H  G+        F G    R GGL   R    +   R
Sbjct: 1529093 LGAAIVAVVQSRM--MVRGSRRHGRGE--------FRGTRHAREGGLATQRRAAVRRVRR 1529242

Query: 154     AWKSGYQGNMNGEGFILGGVYVIGA--GEQGIILEHREKQFG 193
                W     G++ G   +LG V+ +      Q ++++   +Q G
Sbjct: 1529243 CWVVEVGGSLLGNFELLGKVFGLHCHLAMQNLLVDFTIRQLG 1529368


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.320    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,575,071
Number of Sequences: 89
Number of extensions: 92232
Number of successful extensions: 344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 58
length of query: 212
length of database: 9,347,932
effective HSP length: 95
effective length of query: 117
effective length of database: 9,339,477
effective search space: 1092718809
effective search space used: 1092718809
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)