TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|298566278|ref|NP_001177306.1| selenoprotein L [Ciona intestinalis] (303 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, comp... 42 3e-04 >dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, complete genome, complete sequence Length = 902900 Score = 42.0 bits (97), Expect = 3e-04 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 7/155 (4%) Frame = +1 Query: 150 LVILLRHFAULPURKHVTEIQEKQDEFSQ-LKCSIILVSFG--EEAG---ADLWLKETKF 203 LVI RHF + R+ V E+ ++ F Q K ++++ G E+A D L Sbjct: 387229 LVIWPRHFGCVLCRRLVKELAAREQAFRQERKWRLMVIGCGTPEQAAKFRTDATLGPLPA 387408 Query: 204 SFPMYLDKQRKIYSALGLGRSVAKVYNCNALSLYGLAKATFEEIPKQYKD-IHDDPQQLG 262 S P+Y D R+ Y AL R + +N AL +F++ +Q D I D Q G Sbjct: 387409 SIPVYTDPLRRSYLALRFRRGILSTFNLPALQ---NILDSFQKGERQRWDMIPPDAFQQG 387579 Query: 263 GDFIVSLAEDNQTKFSFIHRSVDSADRPKLTVLLD 297 G ++L E + ++RS + D P LL+ Sbjct: 387580 G---IALIERDTGALWMLYRSQYAGDAPTAEDLLN 387675 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.318 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,652,807 Number of Sequences: 20 Number of extensions: 57083 Number of successful extensions: 246 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 242 Number of HSP's gapped (non-prelim): 9 length of query: 303 length of database: 5,515,582 effective HSP length: 95 effective length of query: 208 effective length of database: 5,513,682 effective search space: 1146845856 effective search space used: 1146845856 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)