TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|298566278|ref|NP_001177306.1| selenoprotein L [Ciona
intestinalis]
         (303 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, comp...    42   3e-04

>dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, complete genome, complete
              sequence
          Length = 902900

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 7/155 (4%)
 Frame = +1

Query: 150    LVILLRHFAULPURKHVTEIQEKQDEFSQ-LKCSIILVSFG--EEAG---ADLWLKETKF 203
              LVI  RHF  +  R+ V E+  ++  F Q  K  ++++  G  E+A     D  L     
Sbjct: 387229 LVIWPRHFGCVLCRRLVKELAAREQAFRQERKWRLMVIGCGTPEQAAKFRTDATLGPLPA 387408

Query: 204    SFPMYLDKQRKIYSALGLGRSVAKVYNCNALSLYGLAKATFEEIPKQYKD-IHDDPQQLG 262
              S P+Y D  R+ Y AL   R +   +N  AL        +F++  +Q  D I  D  Q G
Sbjct: 387409 SIPVYTDPLRRSYLALRFRRGILSTFNLPALQ---NILDSFQKGERQRWDMIPPDAFQQG 387579

Query: 263    GDFIVSLAEDNQTKFSFIHRSVDSADRPKLTVLLD 297
              G   ++L E +      ++RS  + D P    LL+
Sbjct: 387580 G---IALIERDTGALWMLYRSQYAGDAPTAEDLLN 387675


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.318    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,652,807
Number of Sequences: 20
Number of extensions: 57083
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 9
length of query: 303
length of database: 5,515,582
effective HSP length: 95
effective length of query: 208
effective length of database: 5,513,682
effective search space: 1146845856
effective search space used: 1146845856
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)