genewise output
Score 29.82 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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Aureococcus       57 CNLARFPQVQAFVHKDMARQFPQ                           
                     CNL++FP   +F + D    FPQ                           
                     CNLSQFPSASSFAYNDSTHPFPQ                           
supercontig_1.1  182 tacactctgtttgtagtacctcc                           
                     gatgatccccctcaaaccactca                           
                     ttgcgttctcccgcccaccgtta                           


//
>supercontig_1.12:subseq(420000,10000).pep
CNLSQFPSASSFAYNDSTHPFPQ
//
>supercontig_1.12:subseq(420000,10000).[182:250].sp
TGTAATCTGAGCCAGTTTCCTTCCGCTTCCTCCTTCGCGTACAACGACTCAACCCACCCG
TTTCCTCAA
//
supercontig_1.12:subseq(420000,10000)	GeneWise	match	182	250	29.82	+	.	supercontig_1.12:subseq(420000,10000)-genewise-prediction-1
supercontig_1.12:subseq(420000,10000)	GeneWise	cds	182	250	0.00	+	0	supercontig_1.12:subseq(420000,10000)-genewise-prediction-1
//