genewise output
Score 80.79 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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scaffold_323       5 VVVLLFIFIGESSSISITSPKH---SCHELGFTDSLLCSTCKDFAEFVG 
                     +++L+ +++  SS IS          CH+LGFTDSLLCS+CKD+  FVG 
                     ILILMCFYVSTSSGISPPKTNQLSLDCHDLGFTDSLLCSSCKDLEGFVG 
gi|284795330|gb-1938 atatatttgtaaagatccaaacttcgtcgcgtagtccttttagcggtgg 
                     tttttgtatccgggtcccacaatctagaatgtcacttgccgaatagttg 
                     caaggtctactccttaaagctagacttttatcacatacatcatcattat 


scaffold_323      51 D--SDLNNECAKCCAEESENIK                       KTYL 
                     D  S +  EC KCC+ E+   K                       KT++ 
                     DANSAVIEECKKCCSLEATQQK                       KTFV 
gi|284795330|gb-1791 ggatggaggtaatttcggaccaGTATATT  Intron 1   TAGaatg 
                     acaccttaagaaggctaccaaa<0-----[1725 : 1633]-0>actt 
                     tctctacaacagttacaacaag                       aatt 


scaffold_323      75 SATLIACKXRLGAFPHIKDFIDNKAKDYNKFKFT                
                     SA L  C+X+LGAFP +KDFIDNK+K++NK                    
                     SAQLTICRXKLGAFPSVKDFIDNKSKNFNKVSVN                
gi|284795330|gb-1620 agccaatatatggtcagagtagaaaaataagtga                
                     gcatctgggatgctcgtaattaaagaataatcta                
                     tgagaataagatccattgtctccgcgtctaaatt                


scaffold_323     109                        HEQGANPRLVLRDTEGKEEEI      
                                            +  GA+P + L DTEGK E+I      
                                            YVSGASPVIELTDTEGKVEKI      
gi|284795330|gb-1518 GTAAGTT  Intron 2   TAGtgaggtcgagcagaggaggaa      
                     <0-----[1518 : 1447]-0>atggcccttatcacagataat      
                                            tattttactacactaagcaac      


scaffold_323     130                           IDGWKSENLEEFL           
                                               ID WK EN+EEFL           
                                S:N[aac]       IDKWKVENIEEFL           
gi|284795330|gb-1383 AAGTATGTA  Intron 3   TAGCagataggaaggtt           
                       <2-----[1381 : 1302]-2> taagataataatt           
                                               ttagatattaaca           


//
Making a N in phase 2 intron
>gi|284795330|gb|GL290990.1|:subseq(2085000,10000).pep
ILILMCFYVSTSSGISPPKTNQLSLDCHDLGFTDSLLCSSCKDLEGFVGDANSAVIEECK
KCCSLEATQQKKTFVSAQLTICRXKLGAFPSVKDFIDNKSKNFNKVSVNYVSGASPVIEL
TDTEGKVEKINIDKWKVENIEEFL
//
>gi|284795330|gb|GL290990.1|:subseq(2085000,10000).[1938:1260].sp
ATCTTAATATTGATGTGTTTCTATGTATCCACTAGCAGCGGTATTTCACCACCAAAGACC
AATCAATTGTCACTCGATTGTCATGATCTAGGTTTCACAGACTCACTTCTATGCTCATCT
TGCAAAGATCTCGAAGGTTTTGTAGGTGATGCCAATTCCGCTGTAATCGAAGAATGCAAA
AAGTGTTGTTCACTCGAAGCAACCCAACAAAAGAAAACATTTGTTAGTGCGCAACTGACA
ATATGTAGATGAAAGTTAGGTGCCTTCCCAAGTGTTAAGGATTTCATTGACAACAAGAGC
AAGAATTTCAATAAAGTATCAGTTAATTATGTAAGTGGTGCTTCTCCAGTCATTGAACTC
ACAGACACTGAAGGAAAGGTCGAAAAAATCAACATTGATAAATGGAAAGTTGAAAATATT
GAAGAATTCTTA
//
gi|284795330|gb|GL290990.1|:subseq(2085000,10000)	GeneWise	match	1938	1262	83.79	-	.	gi|284795330|gb|GL290990.1|:subseq(2085000,10000)-genewise-prediction-1
gi|284795330|gb|GL290990.1|:subseq(2085000,10000)	GeneWise	cds	1938	1726	0.00	-	0	gi|284795330|gb|GL290990.1|:subseq(2085000,10000)-genewise-prediction-1
gi|284795330|gb|GL290990.1|:subseq(2085000,10000)	GeneWise	intron	1725	1633	0.00	-	.	gi|284795330|gb|GL290990.1|:subseq(2085000,10000)-genewise-prediction-1
gi|284795330|gb|GL290990.1|:subseq(2085000,10000)	GeneWise	cds	1632	1519	0.00	-	0	gi|284795330|gb|GL290990.1|:subseq(2085000,10000)-genewise-prediction-1
gi|284795330|gb|GL290990.1|:subseq(2085000,10000)	GeneWise	intron	1518	1447	0.00	-	.	gi|284795330|gb|GL290990.1|:subseq(2085000,10000)-genewise-prediction-1
gi|284795330|gb|GL290990.1|:subseq(2085000,10000)	GeneWise	cds	1446	1382	0.00	-	0	gi|284795330|gb|GL290990.1|:subseq(2085000,10000)-genewise-prediction-1
gi|284795330|gb|GL290990.1|:subseq(2085000,10000)	GeneWise	intron	1381	1302	0.00	-	.	gi|284795330|gb|GL290990.1|:subseq(2085000,10000)-genewise-prediction-1
gi|284795330|gb|GL290990.1|:subseq(2085000,10000)	GeneWise	cds	1301	1262	0.00	-	1	gi|284795330|gb|GL290990.1|:subseq(2085000,10000)-genewise-prediction-1
//