TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Aureococcus anophagefferens (108 letters) Database: C.owczarzaki/genome.fa 89 sequences; 28,043,798 total letters Searching........................................................................................done Score E Sequences producing significant alignments: (bits) Value supercontig_1.4 of Capsaspora owczarzaki ATCC 30864 30 0.24 supercontig_1.20 of Capsaspora owczarzaki ATCC 30864 30 0.31 supercontig_1.16 of Capsaspora owczarzaki ATCC 30864 30 0.31 supercontig_1.12 of Capsaspora owczarzaki ATCC 30864 30 0.31 supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 30 0.31 supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 30 0.31 supercontig_1.8 of Capsaspora owczarzaki ATCC 30864 29 0.40 supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 29 0.53 supercontig_1.66 of Capsaspora owczarzaki ATCC 30864 27 2.0 supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 27 2.6 supercontig_1.7 of Capsaspora owczarzaki ATCC 30864 25 7.6 supercontig_1.5 of Capsaspora owczarzaki ATCC 30864 25 7.6 supercontig_1.17 of Capsaspora owczarzaki ATCC 30864 25 9.9 >supercontig_1.4 of Capsaspora owczarzaki ATCC 30864 Length = 2141673 Score = 30.0 bits (66), Expect = 0.24 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Frame = -2 Query: 24 HLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARFPQVQAFVHKDMARQFPQVALK 83 H +TLL DC CCI H+ + L C F + +F + P + Sbjct: 1341725 HRQTLLPDCHDCCISRRRSDHDSFS---LSFCSATFLSFFFLISFHFSSLPSLSPLIPTV 1341555 Query: 84 D---ADFKTKEVLSVEK 97 + ADF K + EK Sbjct: 1341554 ENFFADFGPKFGQNSEK 1341504 >supercontig_1.20 of Capsaspora owczarzaki ATCC 30864 Length = 41180 Score = 29.6 bits (65), Expect = 0.31 Identities = 13/39 (33%), Positives = 16/39 (41%) Frame = -3 Query: 24 HLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARF 62 H +TLL DC CCI H+ + L C F Sbjct: 28722 HRQTLLPDCHDCCISRRRSDHDSFS---LSFCSATFLSF 28615 >supercontig_1.16 of Capsaspora owczarzaki ATCC 30864 Length = 797998 Score = 29.6 bits (65), Expect = 0.31 Identities = 13/39 (33%), Positives = 16/39 (41%) Frame = +1 Query: 24 HLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARF 62 H +TLL DC CCI H+ + L C F Sbjct: 114874 HRQTLLPDCHDCCISRRRSDHDSFS---LSFCSATFLSF 114981 Score = 26.6 bits (57), Expect = 2.6 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = -2 Query: 1 ECKAAGFNPETLKCGLCERLSDYHLETLLTD--CLQCCIKEEEFK 43 +C GF PE +CG R S L +L D CLQ C + + K Sbjct: 49065 KCLRVGFEPEP*RCG---RQSVSGLYAILHDRSCLQACQRSQTGK 48940 >supercontig_1.12 of Capsaspora owczarzaki ATCC 30864 Length = 1052152 Score = 29.6 bits (65), Expect = 0.31 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +2 Query: 57 CNLARFPQVQAFVHKDMARQFPQ 79 CNL++FP +F + D FPQ Sbjct: 420182 CNLSQFPSASSFAYNDSTHPFPQ 420250 Score = 29.6 bits (65), Expect = 0.31 Identities = 13/39 (33%), Positives = 16/39 (41%) Frame = -1 Query: 24 HLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARF 62 H +TLL DC CCI H+ + L C F Sbjct: 559210 HRQTLLPDCHDCCISRRRSDHDSFS---LSFCSATFLSF 559103 Score = 29.3 bits (64), Expect = 0.40 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +2 Query: 14 CGLCERLSDYHLETLLTDCLQCCIKE 39 C C+ L + L + +DCL+CC E Sbjct: 123611 CSSCDNLDTFSLGFMKSDCLRCCQSE 123688 Score = 26.9 bits (58), Expect = 2.0 Identities = 8/15 (53%), Positives = 13/15 (86%) Frame = +3 Query: 52 LEVCECNLARFPQVQ 66 +EVC+CN AR+P ++ Sbjct: 123972 IEVCQCNWARYPDIK 124016 >supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 Length = 2526540 Score = 29.6 bits (65), Expect = 0.31 Identities = 13/39 (33%), Positives = 16/39 (41%) Frame = +2 Query: 24 HLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARF 62 H +TLL DC CCI H+ + L C F Sbjct: 1598339 HRQTLLPDCHDCCISRRRSDHDSFS---LSFCSATFLSF 1598446 >supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 Length = 3794667 Score = 29.6 bits (65), Expect = 0.31 Identities = 13/39 (33%), Positives = 16/39 (41%) Frame = -1 Query: 24 HLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARF 62 H +TLL DC CCI H+ + L C F Sbjct: 2814960 HRQTLLPDCHDCCISRRRSDHDSFS---LSFCSATFLSF 2814853 Score = 24.6 bits (52), Expect = 9.9 Identities = 8/25 (32%), Positives = 15/25 (60%) Frame = -3 Query: 7 FNPETLKCGLCERLSDYHLETLLTD 31 F+ + CGLCE + D +++ + D Sbjct: 3673603 FDSDATSCGLCEMVQDKNVKIAIKD 3673529 >supercontig_1.8 of Capsaspora owczarzaki ATCC 30864 Length = 1512001 Score = 29.3 bits (64), Expect = 0.40 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -3 Query: 24 HLETLLTDCLQCCIKEEEFKHEKY 47 H +TLL DC CCI H+ + Sbjct: 488918 HRQTLLPDCHDCCISRRRSDHDSF 488847 >supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 Length = 955311 Score = 28.9 bits (63), Expect = 0.53 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +1 Query: 10 ETLKCGLCERLSDYHLETLLTDCLQCC 36 ETL+ LC+RL H + LL C CC Sbjct: 856651 ETLRAHLCQRLCR*HQKGLLLVCCCCC 856731 Score = 28.1 bits (61), Expect = 0.90 Identities = 12/39 (30%), Positives = 15/39 (38%) Frame = +2 Query: 24 HLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARF 62 H +TL DC CCI H+ + L C F Sbjct: 461522 HRQTLFPDCHDCCISRRRSDHDSFS---LSFCSATFLSF 461629 >supercontig_1.66 of Capsaspora owczarzaki ATCC 30864 Length = 7200 Score = 26.9 bits (58), Expect = 2.0 Identities = 12/39 (30%), Positives = 15/39 (38%) Frame = +1 Query: 24 HLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARF 62 H +TLL DC CC H+ + L C F Sbjct: 1168 HRQTLLPDCHDCCNSRRRSDHDSFS---LSFCSATFLSF 1275 >supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 Length = 2668053 Score = 26.6 bits (57), Expect = 2.6 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Frame = +1 Query: 68 FVHKDMARQF----PQVALKDADFKTKEVLSVEK 97 FVH+D+A + P + +K ADF LSVE+ Sbjct: 1426783 FVHRDLAARNCLVGPMLTVKIADFGLSRALSVER 1426884 Score = 25.4 bits (54), Expect = 5.8 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = -3 Query: 52 LEVCECN-----LARFPQVQAFVHKDMARQFPQVALKDADFKTKEVLSVEKWDTDTLIDF 106 ++VC C L RF + H ++RQFPQV + ++ + T IDF Sbjct: 2240926 IKVCLCRPFLAVLLRFVFGGSLAHNTLSRQFPQV--------NRHYIAAQGPTASTQIDF 2240771 Query: 107 FN 108 ++ Sbjct: 2240770 WH 2240765 >supercontig_1.7 of Capsaspora owczarzaki ATCC 30864 Length = 1544042 Score = 25.0 bits (53), Expect = 7.6 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -3 Query: 55 CECNLARFPQVQA 67 CEC+L RFP+ QA Sbjct: 587736 CECSLKRFPREQA 587698 Score = 24.6 bits (52), Expect = 9.9 Identities = 12/46 (26%), Positives = 23/46 (50%) Frame = +3 Query: 9 PETLKCGLCERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEV 54 P+ + GLC + + + + C+QC + +H+ P A LE+ Sbjct: 744750 PDLARRGLCAADAGNDVTSKSSSCIQCTECKYRARHDPGP*AGLEI 744887 >supercontig_1.5 of Capsaspora owczarzaki ATCC 30864 Length = 1755934 Score = 25.0 bits (53), Expect = 7.6 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 Query: 19 RLSDYHLETLLTDCLQ 34 RLSD+H +LL +CLQ Sbjct: 1590746 RLSDHHSGSLLPECLQ 1590699 >supercontig_1.17 of Capsaspora owczarzaki ATCC 30864 Length = 792894 Score = 24.6 bits (52), Expect = 9.9 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +1 Query: 20 LSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCEC 57 + + HL LL IK +HEKYPT + +C Sbjct: 72856 VEERHLAVLLYSRTLKFIKRHS-EHEKYPTVAADAVQC 72966 Score = 24.6 bits (52), Expect = 9.9 Identities = 13/44 (29%), Positives = 20/44 (45%) Frame = -3 Query: 17 CERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLA 60 C L +H LT+CL C ++ E PT+ + + LA Sbjct: 712714 CFSLFKWHAVLALTNCLVNCTTGDDVPFEVLPTSNIYEVKVQLA 712583 Database: C.owczarzaki/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,043,798 Number of sequences in database: 89 Lambda K H 0.324 0.137 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,533,687 Number of Sequences: 89 Number of extensions: 76897 Number of successful extensions: 431 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 338 Number of HSP's gapped (non-prelim): 283 length of query: 108 length of database: 9,347,932 effective HSP length: 83 effective length of query: 25 effective length of database: 9,340,545 effective search space: 233513625 effective search space used: 233513625 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 52 (24.6 bits)