TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aureococcus anophagefferens
         (108 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349487.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    27   2.0  
gb|GL349501.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   3.5  
gb|GL349482.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   4.6  

>gb|GL349487.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.55,
              whole genome shotgun sequence
          Length = 273410

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 2      CKAAGFNPETLKCGLCERLSDYHLETLL 29
              C  A F   + +CGLC  + D H  +LL
Sbjct: 268301 CLVAQFRSRSRRCGLCRAMFDLHHISLL 268218


>gb|GL349501.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.69,
             whole genome shotgun sequence
          Length = 134945

 Score = 26.2 bits (56), Expect = 3.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 48    PTAILEVCECNLARFPQVQAFVHKDMAR 75
             P  IL  C CN    PQ+Q+ +  D+AR
Sbjct: 89740 PRPILNTCPCNCCCLPQMQSLL-SDIAR 89820


>gb|GL349482.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.50,
              whole genome shotgun sequence
          Length = 300393

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 32     CLQCCIKEEEFKHEKYPTAILEVCECNLARFPQVQA 67
              C  C ++E   + ++   A+ E+C C L R   + A
Sbjct: 289797 C*GCAVREPRRRGDQGRDAVRELCHCTLRRLRPIPA 289904


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.324    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,705,384
Number of Sequences: 131
Number of extensions: 48031
Number of successful extensions: 225
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 8
length of query: 108
length of database: 9,560,209
effective HSP length: 83
effective length of query: 25
effective length of database: 9,549,336
effective search space: 238733400
effective search space used: 238733400
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)