TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= scaffold_323 [translate(1)]
         (147 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    27   1.3  
gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whol...    26   3.7  
gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol...    25   8.3  

>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 27.3 bits (59), Expect = 1.3
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = -2

Query: 96     DNKAKDYNKFKFTHEQGANPRLVLRDTEGKEEEISIDGWKSENLEEFLIQNN 147
              D + K  +K     E G+ P L + DT   +E ISI+G K ENLE    QN+
Sbjct: 524287 DKEEKFDSKVGEPTEGGSTPVLAI-DTSNLDE-ISIEGIKLENLEVSQTQND 524138


>gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whole genome shotgun sequence
          Length = 1278458

 Score = 25.8 bits (55), Expect = 3.7
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -1

Query: 58      CAKCCAEESENIKKTYLSATLIACKXR----LGAFPHIKDFIDNK 98
               C  C  E  E  KK Y       CK R    L  F H++D +DNK
Sbjct: 1118285 CPLCMEEMDETDKKFY------PCKCRYQICLWCFYHVRDQLDNK 1118169



 Score = 25.8 bits (55), Expect = 3.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 43      KDFAEFVGDSDLNNECA 59
               KD+ E V  +DLNN+C+
Sbjct: 1120044 KDYEELVSKNDLNNKCS 1120094


>gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun
             sequence
          Length = 1344712

 Score = 24.6 bits (52), Expect = 8.3
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +3

Query: 91    IKDFIDNKAKDYNKFKFTHEQGAN------PRLVLRDTEGKEEEISIDGWKSENLEEFLI 144
             +KD +D +   Y  FKF H Q  N       + + +  + K  +I  D    ++L E  +
Sbjct: 75333 LKD-LDERIAKYELFKFNHSQRLNSVDLKISKDIQKKDDNKRRKIDNDHLLDQSLTEIDL 75509

Query: 145   QN 146
             +N
Sbjct: 75510 KN 75515


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.324    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,411,031
Number of Sequences: 8
Number of extensions: 18173
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 48
length of query: 147
length of database: 3,034,108
effective HSP length: 83
effective length of query: 64
effective length of database: 3,033,444
effective search space: 194140416
effective search space used: 194140416
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)