TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aureococcus anophagefferens
         (108 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    28   0.36 
gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    27   1.1  
gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whol...    25   3.1  
gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol...    24   5.2  

>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun sequence
          Length = 1332857

 Score = 28.1 bits (61), Expect = 0.36
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = -1

Query: 18      ERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCE-CNLARFPQVQAFVHKDMARQ 76
               +++    + +LL D   C   +     E     +   C+ CN A+FP +  F+   +   
Sbjct: 1164059 QKIEMNQIPSLLFDGANCLFLKRNSITESCGGELQRPCDNCNSAQFPVLIYFIANVICNV 1163880

Query: 77      FPQVALKDADFKTKEVLSVEKWDTDTLIDF 106
               F  + LK     T  ++S  +    TL+ F
Sbjct: 1163879 FSVLVLKHGTASTGFIVSTLRLPVTTLVFF 1163790


>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 26.6 bits (57), Expect = 1.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 5      AGFNPETLKCGLCERLSDYHLETLLTDCLQC 35
              +  N E +KCG C+R +  +    L++C  C
Sbjct: 931818 SNLNIEKVKCGYCDRSTCDNANCKLSECSNC 931726



 Score = 26.2 bits (56), Expect = 1.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 54     VCECNLARFPQVQAFVHK 71
              V  C++A+FP+V  F HK
Sbjct: 472249 VLSCSIAQFPEVVVFTHK 472196


>gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whole genome shotgun
              sequence
          Length = 985969

 Score = 25.0 bits (53), Expect = 3.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 15     GLCERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAI 51
              GLC  +SD+ +  +  +CL   +   +  H + P+ I
Sbjct: 427687 GLCGDVSDWRMTAIPFNCLMKIVPSNDETHPELPSNI 427577


>gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun sequence
          Length = 1344712

 Score = 24.3 bits (51), Expect = 5.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 42      FKHEKYPTA---ILEVCECNLARFPQVQAFVHKDMARQFPQVALKD 84
               F ++ +P++    LEV +  L   P VQ    +D   + PQ  +KD
Sbjct: 1263269 FPNQAHPSSGYYRLEVDQAPLITVPVVQEIQRRDKIIEVPQTIIKD 1263406


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.324    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,147,487
Number of Sequences: 8
Number of extensions: 15150
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 32
length of query: 108
length of database: 3,034,108
effective HSP length: 77
effective length of query: 31
effective length of database: 3,033,492
effective search space: 94038252
effective search space used: 94038252
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)