T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=99
*
 BAD AVG GOOD
*
SPP00000017_1.0   :  99
scaffold_304      :  99
cons              :  99

SPP00000017_1.0   MSLLLPPLALLLLLAALVAPATAATAYRPDWNRLSGLTRARVETC
scaffold_304      ------------------------------------LARGRVETC

cons                                                  *:*.*****


SPP00000017_1.0   GGXQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRYE
scaffold_304      GGXQLNRLKEVKAFVTEDIQLYHNLVMKHLPGADPELVLLSRNYQ

cons              ****************:** :*******************.*.*:


SPP00000017_1.0   ELERIPLSEMTREEINALVQELGFYRKAAPDAQVPPEYVWAPAKP
scaffold_304      ELERIPLSQMT----------------------------------

cons              ********:**                                  


SPP00000017_1.0   PEETSDHADL
scaffold_304      ----------

cons