TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000057_1.0 # Protein # Selenoprotein 15 (Sel15) #
Caenorhabditis elegans # Complete
         (152 letters)

Database: genome.fa 
           5578 sequences; 78,051,097 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQY01001160.1| Phytophthora sojae strain P6497 Psojae_Cont11...    44   1e-04
gb|AAQY01004650.1| Phytophthora sojae strain P6497 Psojae_Cont46...    31   0.64 
gb|AAQY01000962.1| Phytophthora sojae strain P6497 Psojae_Cont96...    31   0.64 
gb|AAQY01004218.1| Phytophthora sojae strain P6497 Psojae_Cont42...    29   3.2  
gb|AAQY01000926.1| Phytophthora sojae strain P6497 Psojae_Cont92...    28   7.0  
gb|AAQY01000204.1| Phytophthora sojae strain P6497 Psojae_Cont20...    27   9.2  

>gb|AAQY01001160.1| Phytophthora sojae strain P6497 Psojae_Cont1160, whole genome shotgun
             sequence
          Length = 110087

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
 Frame = -3

Query: 26    VEECKAAGFNPETLKCGLCERLSDY--------------HLETLLTDCLQCC---IKEEE 68
             +E C   GF+ + L C LC+ LS Y               ++ + ++C  CC    K  E
Sbjct: 14544 LERCAMLGFDADALDCRLCDDLSTYLGSVKSTKKKPKQKAVDLVTSECRDCCSDFSKVLE 14365

Query: 69    FKHEKYPTAILEVCECNLARFPQVQAFV 96
              +  +Y  A+L V +  L R+P+V  FV
Sbjct: 14364 AEGRRYAKAVLAVSQHRLKRYPKVANFV 14281


>gb|AAQY01004650.1| Phytophthora sojae strain P6497 Psojae_Cont4650, whole genome
           shotgun sequence
          Length = 2230

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 42  GLCERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARFPQVQAFVHK 98
           G  ERL  + L T  +   +CC+        + P  + E C C     PQV+ ++ +
Sbjct: 169 GARERLFTWSLYTPASSIKKCCVPRHTLTETRKPVCVTEGCHCT----PQVKEYLQR 327


>gb|AAQY01000962.1| Phytophthora sojae strain P6497 Psojae_Cont962, whole genome shotgun
             sequence
          Length = 64459

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -2

Query: 42    GLCERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARFPQVQAFVHK 98
             G  ERL  + L T  +   +CC+        + P  + E C C     PQV+ ++ +
Sbjct: 47844 GARERLFTWSLYTPASSIKKCCVPRHTLTETRKPVCVTEGCHCT----PQVKEYLQR 47686


>gb|AAQY01004218.1| Phytophthora sojae strain P6497 Psojae_Cont4218, whole genome shotgun
            sequence
          Length = 5908

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 37   ETLKCGLCERLSDYHLETLLTDC--LQCCIKEEEFKHEKYPTAILEVCECNLARFPQV 92
            ++L+C  CE L+ Y    +   C  LQ  ++++  KH    T I   C+ N A+ P V
Sbjct: 1012 QSLRCSTCEALAQYKNRDISFRCAKLQSEVQKKSSKH----TTITICCKVNKAQCPIV 1173


>gb|AAQY01000926.1| Phytophthora sojae strain P6497 Psojae_Cont926, whole genome shotgun
             sequence
          Length = 458946

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 42    GLCERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEV 81
             G+ + L    L  LLT C+      EE + ++YP  +L+V
Sbjct: 48842 GMIDCLLAVSLTQLLTVCVNLSFGSEETRSQRYPLLVLQV 48723


>gb|AAQY01000204.1| Phytophthora sojae strain P6497 Psojae_Cont204, whole genome shotgun
             sequence
          Length = 154784

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 17/74 (22%)
 Frame = -1

Query: 29    CKAAGFNPETLKCGLCERLSDYHLE-----------------TLLTDCLQCCIKEEEFKH 71
             CK  GF P      +C+  +  +L+                 TLL   L C    ++   
Sbjct: 14471 CKM*GFCPLIAH*SVCKSATSANLDGCEGKVRVRNASKPIYSTLLAPTLFCSDYTDKMT* 14292

Query: 72    EKYPTAILEVCECN 85
              KY + +LEVC CN
Sbjct: 14291 LKYTSKLLEVCYCN 14250


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 78,051,097
  Number of sequences in database:  5578
  
Lambda     K      H
   0.324    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,319,872
Number of Sequences: 5578
Number of extensions: 202836
Number of successful extensions: 1114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 537
length of query: 152
length of database: 26,017,032
effective HSP length: 97
effective length of query: 55
effective length of database: 25,475,966
effective search space: 1401178130
effective search space used: 1401178130
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)