Command line: [exonerate -m p2g --showtargetgff -q Sel15DD.fa -t Sel15Dpurpureum.regio1.fa]
Hostname: [ws101093.aulescm.upf.edu]

C4 Alignment:
------------
         Query: gi|268638310|ref|XP_647424.2| 15 kDa selenoprotein [Dictyostelium discoideum AX4]
        Target: scaffold_323 [revcomp]
         Model: protein2genome:local
     Raw score: 445
   Query range: 16 -> 164
  Target range: 12463 -> 11952

    17 : IlePheLeuLeuAlaAlaIlePheLeuCysIleLeuIleAsnAspCysGlnGlyValSer :    36
         :!!!:!|||! !!.!!.!:!!!!.|||! !|||!!!|||..!!!:!  ..!..!:!!|||
         LeuTyrLeuCysValValValLeuLeuPheIlePheIleGlyGluSerSerSerIleSer
 12463 : CTTTACCTTTGTGTTGTTGTTTTATTATTTATATTTATAGGTGAATCATCATCTATATCT : 12406

    37 : SerProGlyThrSerAlaSerSerCysHisGluLeuGlyPheThrAspAlaLeuLeuCys :    56
         ! ! !!   :!! !!  !  !|||||||||||||||||||||||||||:!!|||||||||
         IleThr---SerProLysHisSerCysHisGluLeuGlyPheThrAspSerLeuLeuCys
 12405 : ATAACA---TCACCAAAACATTCATGTCACGAATTGGGCTTTACAGATTCACTTTTGTGT : 12349

    57 : SerThrCysLysAspPheAlaGluPheValGlyAspSer{A}  >>>> Target Intr :    70
         |||||||||||||||||||||||||||||||||||||||{!}            70 bp 
         SerThrCysLysAspPheAlaGluPheValGlyAspSer{A}++                
 12348 : TCAACATGTAAAGATTTTGCAGAATTTGTTGGAGATTCA{G}gt................ : 12304

    71 : on 1 >>>>  {la}PheGlyHisGluCysSerIleCysCysSerGluGluSerGluLys :    85
                    { !}!!...!:!!||||||:!!! !||||||:!!||||||||||||!!.
                  ++{sp}LeuAsnAsnGluCysAlaLysCysCysAlaGluGluSerGluAsn
 12303 : .........ag{AT}TTAAACAATGAATGTGCCAAATGTTGTGCAGAAGAATCAGAGAAT : 12192

    86 : ValLysLysThrTyrGlnSerValSerLeuValValCysGlnUnkArgLeuGlyAlaHis :   105
         :!!||||||||||||!  |||!.!!!!|||:!!!.!|||:!!   ||||||||||||  !
         IleLysLysThrTyrLeuSerAlaThrLeuIleAlaCysLys***ArgLeuGlyAlaPhe
 12191 : ATAAAGAAAACTTACCTTTCAGCCACATTGATAGCATGCAAGTGACGTTTAGGGGCTTTC : 12132

   106 : ProGlnIleLysGluPheIleAsnAsnLysAlaLysLeuTyrSerLysLeuSerValLys :   125
         |||!!.||||||!!:||||||:!!||||||||||||  !|||!:!|||!!!!.! !!!  
         ProHisIleLysAspPheIleAspAsnLysAlaLysAspTyrAsnLysPheLysPheThr
 12131 : CCCCACATTAAAGATTTCATTGATAACAAAGCCAAAGATTACAACAAATTCAAATTTACT : 12072

   126 : TyrGluAsnGlyAlaAsnProArgLeuThrLeuValAspSerGluGlyLysLysGluAsp :   145
         :!!|||.!.||||||||||||||||||..!|||  !|||!!!|||||||||:!!|||!!:
         HisGluGlnGlyAlaAsnProArgLeuValLeuArgAspThrGluGlyLysGluGluGlu
 12071 : CACGAACAAGGTGCCAATCCACGTTTAGTTCTCCGTGATACTGAAGGTAAAGAAGAAGAG : 12012

   146 : IleAsnIleGluSerTrpLysLeuGluAsnLeuGluGluTyrLeuValGlnAsnAsn :   164
         |||!:!|||!!:.!!||||||! !|||||||||||||||!:!|||:!!|||||||||
         IleSerIleAspGlyTrpLysSerGluAsnLeuGluGluPheLeuIleGlnAsnAsn
 12011 : ATCAGTATTGATGGCTGGAAATCAGAAAACTTAGAAGAATTTTTAATCCAAAACAAT : 11953

vulgar: gi|268638310|ref|XP_647424.2| 16 164 . scaffold_323 12463 11952 - 445 M 22 66 G 1 0 M 30 90 S 0 1 5 0 2 I 0 66 3 0 2 S 1 2 M 94 282
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-12
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_323	exonerate:protein2genome:local	gene	11953	12463	445	-	.	gene_id 1 ; sequence gi|268638310|ref|XP_647424.2| ; gene_orientation +
scaffold_323	exonerate:protein2genome:local	cds	12307	12463	.	-	.	
scaffold_323	exonerate:protein2genome:local	exon	12307	12463	.	-	.	insertions 0 ; deletions 1
scaffold_323	exonerate:protein2genome:local	splice5	12305	12306	.	-	.	intron_id 1 ; splice_site "GT"
scaffold_323	exonerate:protein2genome:local	intron	12237	12306	.	-	.	intron_id 1
scaffold_323	exonerate:protein2genome:local	splice3	12237	12238	.	-	.	intron_id 0 ; splice_site "AG"
scaffold_323	exonerate:protein2genome:local	cds	11953	12236	.	-	.	
scaffold_323	exonerate:protein2genome:local	exon	11953	12236	.	-	.	insertions 0 ; deletions 0
scaffold_323	exonerate:protein2genome:local	similarity	11953	12463	445	-	.	alignment_id 1 ; Query gi|268638310|ref|XP_647424.2| ; Align 12464 17 66 ; Align 12398 40 90 ; Align 12235 71 282
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
