T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:0 sec.
SCORE=61
*
BAD AVG GOOD
*
gpx1mexicana : 69
gpx8mexicana : 69
hit1 : 54
hit2 : 54
hit3 : 69
hit4 : 54
hit5 : 61
cons : 61
gpx1mexicana ------------------------------------------------
gpx8mexicana ------------------------------------------------
hit1 TVYDFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETAATLY
hit2 KK----------------------------------------------
hit3 ------------------------------------------------
hit4 ------------------------------------------------
hit5 SS----------------------------------------------
cons
gpx1mexicana ------------------------------------------------
gpx8mexicana ------------------------------------------------
hit1 NKYKGQGFTVLAFPCNQFAGQEPGTAVEVKEYACTRFKADFPIMEKID
hit2 ---------S--------------------------------------
hit3 ------------------------------------------------
hit4 ---------VLAFPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKID
hit5 ---------------------------------VT-CGEMF-------
cons
gpx1mexicana ------------------------------------------------
gpx8mexicana ------------------------------------------------
hit1 VNGDKAHPLYEFMKSLKPGILGTKAIKWNFTSFLIDRHGVPVERFSPG
hit2 ------------------------------------------------
hit3 ------------------------------------------------
hit4 VNGSKAHPLYEFMKATIPGLFGTKAIKWNFTSFLIDRHGVPVERFSPG
hit5 -------RFGQLLRAA--------------------------------
cons
gpx1mexicana -----------SSIYDFKVNGGDHKPYDLGQHKGHPVLIYNVASKCGF
gpx8mexicana -----------------------GKTVVLQKYSGYTTLIVNVASRCSL
hit1 ASVEEIEKKL-KSIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGY
hit2 -----------STVFAYSALM-GGKSVALSNYTGRVTVVVNTASLCSF
hit3 -----------------------GKSVALSNYTGRVTVVVNTASLCSF
hit4 ASVED--IEKKLSIYDFQILDADHQLYDLSQHKGHPLLIYNVASRCGY
hit5 --------EM-KSIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGY
cons : * ::.* :: *.** *.
gpx1mexicana TKGGYETATALYNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTR
gpx8mexicana ASANIEMLNKVQQAYDSRRFTVLAFPCAQFANQEPLNNTEIAQWCED-
hit1 TKGGYETATTLYNKYKGQGFTVLAFPCNQFAGQEPGTALEVKEYACTR
hit2 ANSSLQQLTHVQETYGPRGVTILAFPCAQFANQEPKSNEEITVWAQT-
hit3 ANSSLQQLTHVQETYGPRGFTILAFPCAQFANQEPKSNEEIAVWAQT-
hit4 TKGGYETATTLYNKYKGQGFTVLAFPCNQFAGQEPGTALEVKEFACTQ
hit5 TKGGYETATTLYNKYKGQGFTVLAFPCNQFAGQEPGTALEVKEFACTR
cons :... : . : : * : .*:***** ***.*** . .: :.
gpx1mexicana FKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGV----------------
gpx8mexicana LGLLFPVFDRVNVKGSSADPLFQMLRAQQGAP------LWNYTKYLCD
hit1 FKADFPIMEKIDVNGGKAHPLYEFMKATIPGLFGTKAIKWNFTSFLID
hit2 CGVNFPLFDKVKVKGPDAHPLFQMLQASLSST------VFAYSALMGG
hit3 CGLNFPLFDKVKVKGPDAHPLFQMLQASLGPI------RWNYTKFICD
hit4 FKADFPIMAKIDVNGDKAHPLYSYLKRCLTG-----------------
hit5 FKADF-------------------------------------------
cons *
gpx1mexicana ------------------------------------------------
gpx8mexicana RSG---------------------------------------------
hit1 RHGVPVERFSPGASVEDIEKKLSIYDFQILDADHQLYDLSQHKGHPLL
hit2 KSV----------------------------------ALSNYTGRVTV
hit3 REG---------------------------------------------
hit4 ------------------------------------------------
hit5 ------------------------------------------------
cons
gpx1mexicana ------------------------------------------------
gpx8mexicana ----VPRRKLE-------------------------------------
hit1 IYNVASRCGYTKGGYETATTLYNKYKGQGFTVLAFPCNQFAGQEPGTA
hit2 VVNTASLCSFANSSLQQLTHVQETYGPRGVTILAFPCAQFANQEPKSN
hit3 ----IPLVKLD-------------------------------------
hit4 ------------------------------------------------
hit5 ------------------------------------------------
cons
gpx1mexicana ------------------------------------------LGTTLV
gpx8mexicana ------------------------------------------------
hit1 LEVKEFACTQFKADFPIMAKIDVNGDKAHPLYSYLKRCLTGSAGVQAI
hit2 EEITVWAQTC-GVNFPLFDKVKVKGPD---------------------
hit3 ------------------------------------------------
hit4 -----------------------------------------SAGVQAI
hit5 ------------------------------------------------
cons
gpx1mexicana KWNFTAFLVDKDGHAVCRFAPGATMSE----I--EK
gpx8mexicana --------------------PSCSMDALRQSIECVL
hit1 KWNFTSFLIDRHGVPVARFSPGASVEE----IEMQL
hit2 --------------------AHPLFQM----LQASL
hit3 --------------------SSSFLEE----LRRSI
hit4 KWNFTSFLIDRHGVPVARFSPGASVEE----IEMQL
hit5 ----------------------------------HI
cons