T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:1 sec.
SCORE=78
*
BAD AVG GOOD
*
gpx1mexicana : 84
gpx2mexicana : 83
gpx3mexicana : 84
gpx4mexicana : 84
gpx5mexicana : 83
gpx6mexicana : 84
gpx7mexicana : 83
gpx8mexicana : 80
hit1 : 62
hit2 : 65
hit3 : 81
hit4 : 71
hit5 : 73
cons : 78
gpx1mexicana ------------------------------------------------
gpx2mexicana ------------------------------------------------
gpx3mexicana ------------------------------------------------
gpx4mexicana ------------------------------------------------
gpx5mexicana ------------------------------------------------
gpx6mexicana ------------------------------------------------
gpx7mexicana AA----------------------------------------------
gpx8mexicana ------------------------------------------------
hit1 ------------------------------------------------
hit2 KK----------------------------------------------
hit3 ------------------------------------------------
hit4 VLAFPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKIDVNGSKAHPL
hit5 SS----------------------VT-CGEMF--------------RF
cons
gpx1mexicana ------------------------------------------------
gpx2mexicana -----------------------------------------------T
gpx3mexicana ------------------------------------------------
gpx4mexicana -----------------------------------------------A
gpx5mexicana ------------------------------------------------
gpx6mexicana ------------------------------------------------
gpx7mexicana ----AAV--------------------------------------Q-A
gpx8mexicana ------------------------------------------------
hit1 ------------------------------------------------
hit2 -----------------------------------------------S
hit3 ------------------------------------------------
hit4 YEFMKATIPGLFGTKAIKWNFTSFLIDRHGVPVERFSPGASVEDIEKK
hit5 GQLLRAA--------------------------------------E-M
cons
gpx1mexicana SSIYDFKVNGGDHKPYDLGQHKGHPVLIYNVASKCGFTKGGYETATAL
gpx2mexicana MSIYDFKVNGGDHKPYDLGQHKGHPVLIYNVASKCGFTKGGYETATAL
gpx3mexicana -------------KPYDLGQHKGHPVLIYNVASKCGFTKGGYETATAL
gpx4mexicana SSIYDFKVNGGDHKPYDLGQHKGHPVLIYNVASKCGFTKGGYETATAL
gpx5mexicana -SIYDFKVNGGDHKPYDLGQHKGHPVLIYNVASKCGFTKGGYETATAL
gpx6mexicana -------------------QHKGHPVLIYNVASKCGFTKGGYETATAL
gpx7mexicana SSIYDFKVNGGDHKPYDLGQHKGHPVLIYNVASKCGFTKGGYETATAL
gpx8mexicana ------------GKTVVLQKYSGYTTLIVNVASRCSLASANIEMLNKV
hit1 -TVYDFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETAATL
hit2 STVFAYSALMG-GKSVALSNYTGRVTVVVNTASLCSFANSSLQQLTHV
hit3 ------------GKSVALSNYTGRVTVVVNTASLCSFANSSLQQLTHV
hit4 LSIYDFQILDADHQLYDLSQHKGHPLLIYNVASRCGYTKGGYETATTL
hit5 KSIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETATTL
cons ::.* :: *.** *. :... : :
gpx1mexicana YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx2mexicana YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx3mexicana YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx4mexicana YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx5mexicana YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx6mexicana YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx7mexicana YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx8mexicana QQAYDSRRFTVLAFPCAQFANQEPLNNTEIAQWCED-LGLLFPVFDRV
hit1 YNKYKGQGFTVLAFPCNQFAGQEPGTAVEVKEYACTRFKADFPIMEKI
hit2 QETYGPRGVTILAFPCAQFANQEPKSNEEITVWAQT-CGVNFPLFDKV
hit3 QETYGPRGFTILAFPCAQFANQEPKSNEEIAVWAQT-CGLNFPLFDKV
hit4 YNKYKGQGFTVLAFPCNQFAGQEPGTALEVKEFACTQFKADFPIMAKI
hit5 YNKYKGQGFTVLAFPCNQFAGQEPGTALEVKEFACTRFKADFH-----
cons : * : .*:***** ***.*** . .: :. *
gpx1mexicana CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx2mexicana CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx3mexicana CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx4mexicana CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx5mexicana CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx6mexicana CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx7mexicana CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx8mexicana NVKGSSADPLFQMLRAQQGAP--------------LWNYTKYL-CDRS
hit1 DVNGDKAHPLYEFMKSLKPGIL--------GTKAIKWNFTSFL-IDRH
hit2 KVKGPDAHPLFQMLQASLSSTVFAYSALMGGKSVALSNYTGRVTVVVN
hit3 KVKGPDAHPLFQMLQASLGPI--------------RWNYTKFI-CDRE
hit4 DVNGDKAHPLYSYLKRCLTGSA--------GVQAIKWNFTSFL-IDRH
hit5 ------------------------------------------------
cons
gpx1mexicana GHAVCRFAPGATMSEIE-------------------------------
gpx2mexicana GHAVCRFAPGATMSEIEKRLV---------------------------
gpx3mexicana GHAVCRFAPGATMSEIEKRLV---------------------------
gpx4mexicana GHAVCRFAPGATMSEIEKR-----------------------------
gpx5mexicana GHAVCRFAPGATMSEIEKRLV---------------------------
gpx6mexicana GHAVCRFAPGATMSEIEKRLV---------------------------
gpx7mexicana GHAVCRFAPGATMSEIEKR-----------------------------
gpx8mexicana GVPRRKLEPSCS------------------------------------
hit1 GVPVERFSPGASVEEIEKKLKSIYEFQVNAADGKPYDLSQHKGHPLLI
hit2 TASLCSFANSSLQQ----------------------------------
hit3 GIPLVKLDSSSF------------------------------------
hit4 GVPVARFSPGASVEEI--------------------------------
hit5 ------------------------------------------------
cons
gpx1mexicana ------------------------------------------------
gpx2mexicana ------------------------------------------------
gpx3mexicana ------------------------------------------------
gpx4mexicana ------------------------------------------------
gpx5mexicana ------------------------------------------------
gpx6mexicana ------------------------------------------------
gpx7mexicana ------------------------------------------------
gpx8mexicana ------------------------------------------------
hit1 YNVASRCGYTKGGYETATTLYNKYKGQGFTVLAFPCNQFAGQEPGTAL
hit2 ------------------------------------------------
hit3 ------------------------------------------------
hit4 ------------------------------------------------
hit5 ------------------------------------------------
cons
gpx1mexicana ------------------------------------------------
gpx2mexicana ------------------------------------------------
gpx3mexicana ------------------------------------------------
gpx4mexicana ------------------------------------------------
gpx5mexicana ------------------------------------------------
gpx6mexicana ------------------------------------------------
gpx7mexicana ------------------------------------------------
gpx8mexicana ------------------------------------------------
hit1 EVKEYACTRFKADFPIMEKIDVNGGKAHPLYEFMKATIPGLFGTKAIK
hit2 ------------------------------------------------
hit3 ------------------------------------------------
hit4 ------------------------------------------------
hit5 ------------------------------------------------
cons
gpx1mexicana ------------------------------------------------
gpx2mexicana ------------------------------------------------
gpx3mexicana ------------------------------------------------
gpx4mexicana ------------------------------------------------
gpx5mexicana ------------------------------------------------
gpx6mexicana ------------------------------------------------
gpx7mexicana ------------------------------------------------
gpx8mexicana ------------------------------------------------
hit1 WNFTSFLIDRHGVPVERFSPGASVEDIEKKLSIYDFQILDADHQLYDL
hit2 -----------------------LTHVQE-------------------
hit3 ------------------------------------------------
hit4 ------------------------------------------------
hit5 ------------------------------------------------
cons
gpx1mexicana ------------------------------------------------
gpx2mexicana ------------------------------------------------
gpx3mexicana ------------------------------------------------
gpx4mexicana ------------------------------------------------
gpx5mexicana ------------------------------------------------
gpx6mexicana ------------------------------------------------
gpx7mexicana ------------------------------------------------
gpx8mexicana ------------------------------------------------
hit1 SQHKGHPLLIYNVASRCGYTKGGYETATTLYNKYKGQGFTVLAFPCNQ
hit2 --------------------------------TYGPRGVTILAFPCAQ
hit3 ------------------------------------------------
hit4 ------------------------------------------------
hit5 ------------------------------------------------
cons
gpx1mexicana ------------------------------------------------
gpx2mexicana ------------------------------------------------
gpx3mexicana ------------------------------------------------
gpx4mexicana ------------------------------------------------
gpx5mexicana ------------------------------------------------
gpx6mexicana ------------------------------------------------
gpx7mexicana ------------------------------------------------
gpx8mexicana ------------------------------------------------
hit1 FAGQEPGTALEVKEFACTQFKADFPIMAKIDVNGDKAHPLYSYLKRCL
hit2 FANQEPKSNEEITVWAQTC-GVNFPLFDKVKVKGPDA-----------
hit3 ------------------------------------------------
hit4 ------------------------------------------------
hit5 ------------------------------------------------
cons
gpx1mexicana --------------------------------------------K
gpx2mexicana -------------------------------------P-----LL
gpx3mexicana -------------------------------------P----LLE
gpx4mexicana --------------------------------------------L
gpx5mexicana -------------------------------------P----LLE
gpx6mexicana -------------------------------------P----LLE
gpx7mexicana --------------------------------------------L
gpx8mexicana ---------------------------------MDALRQSIECVL
hit1 TGSAGVQAIKWNFTSFLIDRHGVPVARFSPGASVEEIE----MQL
hit2 ------------------------------HPLFQMLQ----ASL
hit3 ---------------------------------LEELR----RSI
hit4 -------------------------------------E----MQL
hit5 --------------------------------------------I
cons