T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:1 sec.
SCORE=78
*
 BAD AVG GOOD
*
gpx1mexicana   :  84
gpx2mexicana   :  83
gpx3mexicana   :  84
gpx4mexicana   :  84
gpx5mexicana   :  83
gpx6mexicana   :  84
gpx7mexicana   :  83
gpx8mexicana   :  80
hit1           :  62
hit2           :  65
hit3           :  81
hit4           :  71
hit5           :  73
cons           :  78

gpx1mexicana   ------------------------------------------------
gpx2mexicana   ------------------------------------------------
gpx3mexicana   ------------------------------------------------
gpx4mexicana   ------------------------------------------------
gpx5mexicana   ------------------------------------------------
gpx6mexicana   ------------------------------------------------
gpx7mexicana   AA----------------------------------------------
gpx8mexicana   ------------------------------------------------
hit1           ------------------------------------------------
hit2           KK----------------------------------------------
hit3           ------------------------------------------------
hit4           VLAFPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKIDVNGSKAHPL
hit5           SS----------------------VT-CGEMF--------------RF

cons                                                           


gpx1mexicana   ------------------------------------------------
gpx2mexicana   -----------------------------------------------T
gpx3mexicana   ------------------------------------------------
gpx4mexicana   -----------------------------------------------A
gpx5mexicana   ------------------------------------------------
gpx6mexicana   ------------------------------------------------
gpx7mexicana   ----AAV--------------------------------------Q-A
gpx8mexicana   ------------------------------------------------
hit1           ------------------------------------------------
hit2           -----------------------------------------------S
hit3           ------------------------------------------------
hit4           YEFMKATIPGLFGTKAIKWNFTSFLIDRHGVPVERFSPGASVEDIEKK
hit5           GQLLRAA--------------------------------------E-M

cons                                                           


gpx1mexicana   SSIYDFKVNGGDHKPYDLGQHKGHPVLIYNVASKCGFTKGGYETATAL
gpx2mexicana   MSIYDFKVNGGDHKPYDLGQHKGHPVLIYNVASKCGFTKGGYETATAL
gpx3mexicana   -------------KPYDLGQHKGHPVLIYNVASKCGFTKGGYETATAL
gpx4mexicana   SSIYDFKVNGGDHKPYDLGQHKGHPVLIYNVASKCGFTKGGYETATAL
gpx5mexicana   -SIYDFKVNGGDHKPYDLGQHKGHPVLIYNVASKCGFTKGGYETATAL
gpx6mexicana   -------------------QHKGHPVLIYNVASKCGFTKGGYETATAL
gpx7mexicana   SSIYDFKVNGGDHKPYDLGQHKGHPVLIYNVASKCGFTKGGYETATAL
gpx8mexicana   ------------GKTVVLQKYSGYTTLIVNVASRCSLASANIEMLNKV
hit1           -TVYDFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETAATL
hit2           STVFAYSALMG-GKSVALSNYTGRVTVVVNTASLCSFANSSLQQLTHV
hit3           ------------GKSVALSNYTGRVTVVVNTASLCSFANSSLQQLTHV
hit4           LSIYDFQILDADHQLYDLSQHKGHPLLIYNVASRCGYTKGGYETATTL
hit5           KSIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETATTL

cons                              ::.*   :: *.** *. :... :    :


gpx1mexicana   YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx2mexicana   YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx3mexicana   YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx4mexicana   YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx5mexicana   YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx6mexicana   YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx7mexicana   YNKYKHQGFTVLAFPCNQFASQEPGTEESVKEFACTRFKAEFPIMEKV
gpx8mexicana   QQAYDSRRFTVLAFPCAQFANQEPLNNTEIAQWCED-LGLLFPVFDRV
hit1           YNKYKGQGFTVLAFPCNQFAGQEPGTAVEVKEYACTRFKADFPIMEKI
hit2           QETYGPRGVTILAFPCAQFANQEPKSNEEITVWAQT-CGVNFPLFDKV
hit3           QETYGPRGFTILAFPCAQFANQEPKSNEEIAVWAQT-CGLNFPLFDKV
hit4           YNKYKGQGFTVLAFPCNQFAGQEPGTALEVKEFACTQFKADFPIMAKI
hit5           YNKYKGQGFTVLAFPCNQFAGQEPGTALEVKEFACTRFKADFH-----

cons            : *  : .*:***** ***.*** .  .:  :.       *      


gpx1mexicana   CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx2mexicana   CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx3mexicana   CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx4mexicana   CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx5mexicana   CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx6mexicana   CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx7mexicana   CVNGEHEHPLYHYLKNTCKGVL--------GTTLVKWNFTAFL-VDKD
gpx8mexicana   NVKGSSADPLFQMLRAQQGAP--------------LWNYTKYL-CDRS
hit1           DVNGDKAHPLYEFMKSLKPGIL--------GTKAIKWNFTSFL-IDRH
hit2           KVKGPDAHPLFQMLQASLSSTVFAYSALMGGKSVALSNYTGRVTVVVN
hit3           KVKGPDAHPLFQMLQASLGPI--------------RWNYTKFI-CDRE
hit4           DVNGDKAHPLYSYLKRCLTGSA--------GVQAIKWNFTSFL-IDRH
hit5           ------------------------------------------------

cons                                                           


gpx1mexicana   GHAVCRFAPGATMSEIE-------------------------------
gpx2mexicana   GHAVCRFAPGATMSEIEKRLV---------------------------
gpx3mexicana   GHAVCRFAPGATMSEIEKRLV---------------------------
gpx4mexicana   GHAVCRFAPGATMSEIEKR-----------------------------
gpx5mexicana   GHAVCRFAPGATMSEIEKRLV---------------------------
gpx6mexicana   GHAVCRFAPGATMSEIEKRLV---------------------------
gpx7mexicana   GHAVCRFAPGATMSEIEKR-----------------------------
gpx8mexicana   GVPRRKLEPSCS------------------------------------
hit1           GVPVERFSPGASVEEIEKKLKSIYEFQVNAADGKPYDLSQHKGHPLLI
hit2           TASLCSFANSSLQQ----------------------------------
hit3           GIPLVKLDSSSF------------------------------------
hit4           GVPVARFSPGASVEEI--------------------------------
hit5           ------------------------------------------------

cons                                                           


gpx1mexicana   ------------------------------------------------
gpx2mexicana   ------------------------------------------------
gpx3mexicana   ------------------------------------------------
gpx4mexicana   ------------------------------------------------
gpx5mexicana   ------------------------------------------------
gpx6mexicana   ------------------------------------------------
gpx7mexicana   ------------------------------------------------
gpx8mexicana   ------------------------------------------------
hit1           YNVASRCGYTKGGYETATTLYNKYKGQGFTVLAFPCNQFAGQEPGTAL
hit2           ------------------------------------------------
hit3           ------------------------------------------------
hit4           ------------------------------------------------
hit5           ------------------------------------------------

cons                                                           


gpx1mexicana   ------------------------------------------------
gpx2mexicana   ------------------------------------------------
gpx3mexicana   ------------------------------------------------
gpx4mexicana   ------------------------------------------------
gpx5mexicana   ------------------------------------------------
gpx6mexicana   ------------------------------------------------
gpx7mexicana   ------------------------------------------------
gpx8mexicana   ------------------------------------------------
hit1           EVKEYACTRFKADFPIMEKIDVNGGKAHPLYEFMKATIPGLFGTKAIK
hit2           ------------------------------------------------
hit3           ------------------------------------------------
hit4           ------------------------------------------------
hit5           ------------------------------------------------

cons                                                           


gpx1mexicana   ------------------------------------------------
gpx2mexicana   ------------------------------------------------
gpx3mexicana   ------------------------------------------------
gpx4mexicana   ------------------------------------------------
gpx5mexicana   ------------------------------------------------
gpx6mexicana   ------------------------------------------------
gpx7mexicana   ------------------------------------------------
gpx8mexicana   ------------------------------------------------
hit1           WNFTSFLIDRHGVPVERFSPGASVEDIEKKLSIYDFQILDADHQLYDL
hit2           -----------------------LTHVQE-------------------
hit3           ------------------------------------------------
hit4           ------------------------------------------------
hit5           ------------------------------------------------

cons                                                           


gpx1mexicana   ------------------------------------------------
gpx2mexicana   ------------------------------------------------
gpx3mexicana   ------------------------------------------------
gpx4mexicana   ------------------------------------------------
gpx5mexicana   ------------------------------------------------
gpx6mexicana   ------------------------------------------------
gpx7mexicana   ------------------------------------------------
gpx8mexicana   ------------------------------------------------
hit1           SQHKGHPLLIYNVASRCGYTKGGYETATTLYNKYKGQGFTVLAFPCNQ
hit2           --------------------------------TYGPRGVTILAFPCAQ
hit3           ------------------------------------------------
hit4           ------------------------------------------------
hit5           ------------------------------------------------

cons                                                           


gpx1mexicana   ------------------------------------------------
gpx2mexicana   ------------------------------------------------
gpx3mexicana   ------------------------------------------------
gpx4mexicana   ------------------------------------------------
gpx5mexicana   ------------------------------------------------
gpx6mexicana   ------------------------------------------------
gpx7mexicana   ------------------------------------------------
gpx8mexicana   ------------------------------------------------
hit1           FAGQEPGTALEVKEFACTQFKADFPIMAKIDVNGDKAHPLYSYLKRCL
hit2           FANQEPKSNEEITVWAQTC-GVNFPLFDKVKVKGPDA-----------
hit3           ------------------------------------------------
hit4           ------------------------------------------------
hit5           ------------------------------------------------

cons                                                           


gpx1mexicana   --------------------------------------------K
gpx2mexicana   -------------------------------------P-----LL
gpx3mexicana   -------------------------------------P----LLE
gpx4mexicana   --------------------------------------------L
gpx5mexicana   -------------------------------------P----LLE
gpx6mexicana   -------------------------------------P----LLE
gpx7mexicana   --------------------------------------------L
gpx8mexicana   ---------------------------------MDALRQSIECVL
hit1           TGSAGVQAIKWNFTSFLIDRHGVPVARFSPGASVEEIE----MQL
hit2           ------------------------------HPLFQMLQ----ASL
hit3           ---------------------------------LEELR----RSI
hit4           -------------------------------------E----MQL
hit5           --------------------------------------------I

cons