TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Homo sapiens # Complete
         (226 letters)

Database: bd_pseudonana.fa 
           113 sequences; 29,453,142 total letters

Searching........................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|209487125|gb|AAFD02000036.1| Thalassiosira pseudonana CCMP133...   104   5e-23
gi|209487156|gb|AAFD02000005.1| Thalassiosira pseudonana CCMP133...    55   4e-08
gi|209487137|gb|AAFD02000024.1| Thalassiosira pseudonana CCMP133...    28   4.9  
gi|209487141|gb|AAFD02000020.1| Thalassiosira pseudonana CCMP133...    28   6.4  

>gi|209487125|gb|AAFD02000036.1| Thalassiosira pseudonana CCMP1335
              chromosome 20 THAPSchr_20_Cont36, whole genome shotgun
              sequence
          Length = 621618

 Score =  104 bits (259), Expect = 5e-23
 Identities = 67/174 (38%), Positives = 91/174 (52%), Gaps = 1/174 (0%)
 Frame = -1

Query: 48     IDGEEYIPFKQYAGKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVILGFPCNQFGK 106
              +DG E +P   + G  +  VNVAS  GLT   Y++ + L +E    G  IL FPCNQFG 
Sbjct: 293607 MDGNE-VPMSSFKGDVLCVVNVASK*GLTKVNYVQFSKLYDEYNSRGFKILAFPCNQFGA 293431

Query: 107    QEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTS 166
              QEPG  +EI   L++V         F  FEKG VNG+  ++ Y+FLK   P      GTS
Sbjct: 293430 QEPGTPAEI---LEFVEKNFQAKDKFTWFEKGHVNGKDTREVYSFLKAKLPSED---GTS 293269

Query: 167    DRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAA 220
                         DIRWNF KF+V  +G P  R+  +T   ++K DI   + ++ A
Sbjct: 293268 -----------DIRWNFAKFMVDHEGNPFKRYGPKTNPEDMKSDIEELLAKREA 293140


>gi|209487156|gb|AAFD02000005.1| Thalassiosira pseudonana CCMP1335
             chromosome 3 THAPSchr_3_Cont5, whole genome shotgun
             sequence
          Length = 2440052

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 58/188 (30%), Positives = 80/188 (42%), Gaps = 1/188 (0%)
 Frame = +3

Query: 39    TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVIL 97
             +IY    + I G +    K YAG   L VNVA   GLT   Y EL  L ++    GL +L
Sbjct: 28581 SIYRSNIMDIHGNQQQLMK-YAGSISLIVNVACE*GLTKSNYKELAVLYDKYHKRGLNVL 28757

Query: 98    GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157
              FP N F  QE   N EI   L+YVR       NF            E +F  F  +  P
Sbjct: 28758 AFPSNDF-HQEKETNEEI---LEYVR------SNF-----------PEVRFPVF--SRAP 28868

Query: 158   PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 217
               S L+        E      + WNF K+LV  +G  +  + HR    +++ DI+  +  
Sbjct: 28869 LASNLVFQ----LCEKHTGESVAWNFHKYLVDGEGRAVKSYGHRVQPIDMEGDIVRLLEE 29036

Query: 218   QAALGVKR 225
               A  V++
Sbjct: 29037 NEAKRVQQ 29060


>gi|209487137|gb|AAFD02000024.1| Thalassiosira pseudonana CCMP1335
             chromosome 14 THAPSchr_14_Cont24, whole genome shotgun
             sequence
          Length = 998643

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -1

Query: 75    LTGQYIELNALQEELAPFGLVI----LGFPCNQFG 105
             L  QY   N L++  +PF L       GFPC QFG
Sbjct: 45207 LLNQYFGWNQLEDPASPFSLSEKEGRAGFPCFQFG 45103


>gi|209487141|gb|AAFD02000020.1| Thalassiosira pseudonana CCMP1335
              chromosome 12 THAPSchr_12_Cont20, whole genome shotgun
              sequence
          Length = 306240

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 148    FYTFLKNSCPPTSELLGTSDRLFWEPM 174
              F+  +  +CPPTS+ LG S    W+ M
Sbjct: 132738 FWMEIPTTCPPTSKWLGISSWSHWKTM 132658


  Database: bd_pseudonana.fa
    Posted date:  Feb 23, 2010  5:52 PM
  Number of letters in database: 29,453,142
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,386,461
Number of Sequences: 113
Number of extensions: 101247
Number of successful extensions: 451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 145
length of query: 226
length of database: 9,817,714
effective HSP length: 96
effective length of query: 130
effective length of database: 9,806,866
effective search space: 1274892580
effective search space used: 1274892580
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
