TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Homo sapiens # Complete
         (190 letters)

Database: genoma_pseudonana.fa 
           113 sequences; 29,453,142 total letters

Searching........................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|209487125|gb|AAFD02000036.1| Thalassiosira pseudonana CCMP133...    99   2e-21
gi|209487156|gb|AAFD02000005.1| Thalassiosira pseudonana CCMP133...    58   3e-09
gi|209487142|gb|AAFD02000019.1| Thalassiosira pseudonana CCMP133...    36   0.017
gi|209487149|gb|AAFD02000012.1| Thalassiosira pseudonana CCMP133...    31   0.56 
gi|209487151|gb|AAFD02000010.1| Thalassiosira pseudonana CCMP133...    29   1.6  

>gi|209487125|gb|AAFD02000036.1| Thalassiosira pseudonana CCMP1335
              chromosome 20 THAPSchr_20_Cont36, whole genome shotgun
              sequence
          Length = 621618

 Score = 98.6 bits (244), Expect = 2e-21
 Identities = 62/181 (34%), Positives = 93/181 (51%), Gaps = 1/181 (0%)
 Frame = -1

Query: 7      SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLG 65
              +FYDL    +DG +V  ++F+G  + + NVAS  G T  ++ Q ++L   +  R   +L 
Sbjct: 293634 AFYDLVDKDMDGNEVPMSSFKGDVLCVVNVASK*GLTKVNYVQFSKLYDEYNSRGFKILA 293455

Query: 66     FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPY 125
              FPCNQFG QE     EIL   ++V      +  FT  +K  VNG++   V+++LK KLP 
Sbjct: 293454 FPCNQFGAQEPGTPAEIL---EFVEKNFQAKDKFTWFEKGHVNGKDTREVYSFLKAKLP- 293287

Query: 126    PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRL 185
                               S    SD+ WNF KF++  EG PF+RY       +++ DI+ L
Sbjct: 293286 -----------------SEDGTSDIRWNFAKFMVDHEGNPFKRYGPKTNPEDMKSDIEEL 293158

Query: 186    L 186
              L
Sbjct: 293157 L 293155


>gi|209487156|gb|AAFD02000005.1| Thalassiosira pseudonana CCMP1335
             chromosome 3 THAPSchr_3_Cont5, whole genome shotgun
             sequence
          Length = 2440052

 Score = 58.2 bits (139), Expect = 3e-09
 Identities = 57/182 (31%), Positives = 79/182 (43%), Gaps = 1/182 (0%)
 Frame = +3

Query: 7     SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLG 65
             S Y  + + + G +     + G   LI NVA   G T  ++ +L  L  ++ +R L VL 
Sbjct: 28581 SIYRSNIMDIHGNQQQLMKYAGSISLIVNVACE*GLTKSNYKELAVLYDKYHKRGLNVLA 28760

Query: 66    FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPY 125
             FP N F HQE   NEEIL   +YVR        F  V+          PVF+    + P 
Sbjct: 28761 FPSNDF-HQEKETNEEIL---EYVRSN------FPEVR---------FPVFS----RAPL 28871

Query: 126   PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRL 185
               +  F L                VAWNF K+L+  EG   + Y      I++E DI RL
Sbjct: 28872 ASNLVFQLCEKHT--------GESVAWNFHKYLVDGEGRAVKSYGHRVQPIDMEGDIVRL 29027

Query: 186   LK 187
             L+
Sbjct: 29028 LE 29033


>gi|209487142|gb|AAFD02000019.1| Thalassiosira pseudonana CCMP1335
              chromosome 12 THAPSchr_12_Cont19, whole genome shotgun
              sequence
          Length = 630688

 Score = 35.8 bits (81), Expect = 0.017
 Identities = 22/81 (27%), Positives = 37/81 (45%)
 Frame = -2

Query: 50     LNELQCRFPRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNG 109
              L  +   +P  L +L FP N      N   ++  +++K     GG +    +++  ++NG
Sbjct: 532470 LEHMHSVYPYALEILAFPFNH----PNVTIDKCEDAIKSAEKSGGTK--VHIMEAIDING 532309

Query: 110    QNEHPVFAYLKDKLPYPYDDP 130
               + HPVF YLK        DP
Sbjct: 532308 DSTHPVFKYLKKIFDLTEMDP 532246


>gi|209487149|gb|AAFD02000012.1| Thalassiosira pseudonana CCMP1335
              chromosome 9 THAPSchr_9_Cont12, whole genome shotgun
              sequence
          Length = 1191060

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 92     GGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYD 128
              GGG QP   L Q+  VNGQ  H   +Y + +  YP D
Sbjct: 960522 GGGEQPRLQLQQQRGVNGQGGHYTESYPEMQQRYPED 960632


>gi|209487151|gb|AAFD02000010.1| Thalassiosira pseudonana CCMP1335
              chromosome 6 THAPSchr_6_Cont10, whole genome shotgun
              sequence
          Length = 2071480

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -2

Query: 65     GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124
              G+P    GHQ++CQ ++I       RP   Y    +L  +   + Q + P + +L   LP
Sbjct: 544650 GYP----GHQQHCQKDQIDPFHTLHRPSPSYASKSSLSIQQTSSTQPKPPSYKHLPYSLP 544483

Query: 125    Y 125
              Y
Sbjct: 544482 Y 544480


  Database: genoma_pseudonana.fa
    Posted date:  Feb 22, 2010  5:17 PM
  Number of letters in database: 29,453,142
  Number of sequences in database:  113
  
Lambda     K      H
   0.323    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,592,374
Number of Sequences: 113
Number of extensions: 105220
Number of successful extensions: 422
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 75
length of query: 190
length of database: 9,817,714
effective HSP length: 94
effective length of query: 96
effective length of database: 9,807,092
effective search space: 941480832
effective search space used: 941480832
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)