TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete (203 letters) Database: bd_pseudonana 113 sequences; 29,453,142 total letters Searching........................................................done Score E Sequences producing significant alignments: (bits) Value gi|209487125|gb|AAFD02000036.1| Thalassiosira pseudonana CCMP133... 100 5e-22 gi|209487156|gb|AAFD02000005.1| Thalassiosira pseudonana CCMP133... 66 2e-11 gi|209487142|gb|AAFD02000019.1| Thalassiosira pseudonana CCMP133... 33 0.097 gi|209487150|gb|AAFD02000011.1| Thalassiosira pseudonana CCMP133... 28 5.3 gi|209487152|gb|AAFD02000009.1| Thalassiosira pseudonana CCMP133... 28 5.3 gi|209487157|gb|AAFD02000004.1| Thalassiosira pseudonana CCMP133... 27 7.0 >gi|209487125|gb|AAFD02000036.1| Thalassiosira pseudonana CCMP1335 chromosome 20 THAPSchr_20_Cont36, whole genome shotgun sequence Length = 621618 Score = 100 bits (250), Expect = 5e-22 Identities = 62/172 (36%), Positives = 87/172 (50%) Frame = -1 Query: 27 GEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN 86 G V + S +G VL + NVAS G T +Y Q ++L RG +L FPCNQFG QE Sbjct: 293601 GNEVPMSSFKGDVLCVVNVASK*GLTKVNYVQFSKLYDEYNSRGFKILAFPCNQFGAQEP 293422 Query: 87 AKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTD 146 EI L++V + F FEK VNG +++FL+ L PS+D T Sbjct: 293421 GTPAEI---LEFVEKNFQAKDKFTWFEKGHVNGKDTREVYSFLKAKL--PSEDGT----- 293272 Query: 147 PKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 +D+ WNF KF+V +G P +RY + D++ DIE LL++ Sbjct: 293271 -----------SDIRWNFAKFMVDHEGNPFKRYGPKTNPEDMKSDIEELLAK 293149 >gi|209487156|gb|AAFD02000005.1| Thalassiosira pseudonana CCMP1335 chromosome 3 THAPSchr_3_Cont5, whole genome shotgun sequence Length = 2440052 Score = 65.9 bits (159), Expect = 2e-11 Identities = 59/184 (32%), Positives = 79/184 (42%) Frame = +3 Query: 15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVL 74 S+Y + + G + L G + LI NVA G T +Y ++ L + RGL VL Sbjct: 28581 SIYRSNIMDIHGNQQ-QLMKYAGSISLIVNVACE*GLTKSNYKELAVLYDKYHKRGLNVL 28757 Query: 75 GFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALP 134 FP N F HQE NEEIL ++ P E F +F + + A L L E Sbjct: 28758 AFPSNDF-HQEKETNEEILEYVRSNFP----EVRFPVFSRAPL----ASNLVFQLCEKHT 28910 Query: 135 APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA 194 S VAWNF K+LV +G ++ Y R Q ID+E DI Sbjct: 28911 GES----------------------VAWNFHKYLVDGEGRAVKSYGHRVQPIDMEGDIVR 29024 Query: 195 LLSQ 198 LL + Sbjct: 29025 LLEE 29036 >gi|209487142|gb|AAFD02000019.1| Thalassiosira pseudonana CCMP1335 chromosome 12 THAPSchr_12_Cont19, whole genome shotgun sequence Length = 630688 Score = 33.5 bits (75), Expect = 0.097 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Frame = -2 Query: 45 VASLUGTTVRDYTQMN----ELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVR 100 + SL + DY+++ E + P L +L FP N N ++ +++K Sbjct: 532527 IFSLRTQIMTDYSEVFYGTLEHMHSVYPYALEILAFPFNH----PNVTIDKCEDAIKSAE 532360 Query: 101 PGGGFEPNFMLFEKCEVNGAGAHPLFAFLRE 131 GG + + M E ++NG HP+F +L++ Sbjct: 532359 KSGGTKVHIM--EAIDINGDSTHPVFKYLKK 532273 >gi|209487150|gb|AAFD02000011.1| Thalassiosira pseudonana CCMP1335 chromosome 8 THAPSchr_8_Cont11, whole genome shotgun sequence Length = 1267198 Score = 27.7 bits (60), Expect = 5.3 Identities = 18/46 (39%), Positives = 22/46 (47%) Frame = -3 Query: 50 GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNS 95 G + D T N L R L V+ G P NQF +EN K +NS Sbjct: 1158815 GKEIEDETLYNTLYRFL-----VLFGIPKNQFCMKENGKVWRAINS 1158693 >gi|209487152|gb|AAFD02000009.1| Thalassiosira pseudonana CCMP1335 chromosome 5 THAPSchr_5_Cont9, whole genome shotgun sequence Length = 2305972 Score = 27.7 bits (60), Expect = 5.3 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = -2 Query: 86 NAKNEEILNSLKYV---RPGGGFEPNFMLFEKCEVNGAG 121 N +N + ++KY PGG +E + + +NGAG Sbjct: 2188410 NERNRNLAQTMKYYPKYHPGGDYEKGYCTYGIPSINGAG 2188294 >gi|209487157|gb|AAFD02000004.1| Thalassiosira pseudonana CCMP1335 chromosome 2 THAPSchr_2_Cont4, whole genome shotgun sequence Length = 2234390 Score = 27.3 bits (59), Expect = 7.0 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = -3 Query: 116 EVNGAGAHPLFAFL---REALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPD 172 E AG HP FAFL + A + T+ + + IT + V A N + PD Sbjct: 1572534 EAPPAGIHPGFAFLFNDNLSAGAVKKEVTSKVEEEATITCTLVIDTIFAQNHDLLAENPD 1572355 Query: 173 G-VPLRRY 179 G V L++Y Sbjct: 1572354 GTVKLKKY 1572331 Database: bd_pseudonana Posted date: Feb 26, 2010 12:17 PM Number of letters in database: 29,453,142 Number of sequences in database: 113 Lambda K H 0.321 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,676,420 Number of Sequences: 113 Number of extensions: 99262 Number of successful extensions: 383 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 356 Number of HSP's gapped (non-prelim): 97 length of query: 203 length of database: 9,817,714 effective HSP length: 95 effective length of query: 108 effective length of database: 9,806,979 effective search space: 1059153732 effective search space used: 1059153732 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)