TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000011_1.0 # Protein # Glutathione peroxidase 8 (GPx8) #
Homo sapiens # Complete
         (209 letters)

Database: bd_brevicollis 
           218 sequences; 41,633,360 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_2                                                             47   1e-05
scaffold_22                                                            38   0.008
scaffold_30                                                            28   6.0  
scaffold_24                                                            28   7.8  

>scaffold_2
          Length = 3607471

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 18/48 (37%), Positives = 30/48 (62%)
 Frame = +1

Query: 82      TDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKN 129
               T  +Y G+ +L+  +    F++LAFPCNQ+ + EP+ +  +E F R N
Sbjct: 1134337 TKMSYEGMSKLYTRYAHQPFTILAFPCNQYDKQEPKSNANIEKFVRGN 1134480



 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 13      GPRAKVFAVLLSIVLCTVTLFLLQLKFLKPKINSFYAFE 51
               GPR   +A+LLS+V C     L     L P ++     E
Sbjct: 1369635 GPRIGAYAILLSVVPCWALALLFSSSHLAPVVSHLVLLE 1369751


>scaffold_22
          Length = 692295

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 68     KVSLVVNVASD*QLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGE 113
              +V ++VN A    L  RN+  + ELH ++    F ++AFP N F +
Sbjct: 341042 QVVMIVNTAGQCGLAQRNFTEMVELHDKYKDQGFEIVAFPSNSFNQ 341179


>scaffold_30
          Length = 568742

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 4     LAAYPLKCSGPRAKVFAVLLSIVLCTVTLFLLQLKFLKPKINSFYAFE 51
             LA +PLKC+     + A     +LC V L   +++ L   I   + FE
Sbjct: 87574 LAKHPLKCTSSHPPMSAENKRAILCKVQLSRKEIQQLTEAIEDLFYFE 87717


>scaffold_24
          Length = 679602

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 146    EGEPAFRFLVDSSKKEPRWNFWKYLVN 172
              +G P    L  +S  EP W FW + V+
Sbjct: 410817 QGSPKMHRLTKASHSEPDWQFWVHCVS 410897


  Database: bd_brevicollis
    Posted date:  Feb 25, 2010  1:30 PM
  Number of letters in database: 41,633,360
  Number of sequences in database:  218
  
Lambda     K      H
   0.324    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,142,751
Number of Sequences: 218
Number of extensions: 138447
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 94
length of query: 209
length of database: 13,877,786
effective HSP length: 97
effective length of query: 112
effective length of database: 13,856,640
effective search space: 1551943680
effective search space used: 1551943680
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)