TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) #
Homo sapiens # Complete
         (197 letters)

Database: bd_terrapinae 
           31,653 sequences; 18,560,894 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

terra324a04.p1k                                                        28   1.5  
terra235g12.p1k                                                        28   1.5  
terra300b11.p1k                                                        27   2.5  

>terra324a04.p1k
          Length = 411

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 123 YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFT 166
           YN+ F +F+    + D+  PL +  +  P+G GI    I WN T
Sbjct: 172 YNLVFAVFTFGNFSNDNRMPLLQLRETDPRGNGI--GTIDWNHT 47


>terra235g12.p1k
          Length = 721

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 123 YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFT 166
           YN+ F +F+    + D+  PL +  +  P+G GI    I WN T
Sbjct: 252 YNLVFAVFTFGNFSNDNRMPLLQLRETDPRGNGI--GTIDWNHT 127


>terra300b11.p1k
          Length = 412

 Score = 27.3 bits (59), Expect = 2.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 124 NVKFDMFSKICVNGDDAHPLWKWMKI 149
           N +FD+    C +    HP WK MK+
Sbjct: 205 NFQFDVHHSFCCHSISIHPSWK*MKL 282


  Database: bd_terrapinae
    Posted date:  Mar 3, 2010 10:30 AM
  Number of letters in database: 18,560,894
  Number of sequences in database:  31,653
  
Lambda     K      H
   0.324    0.140    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,182,608
Number of Sequences: 31653
Number of extensions: 50615
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of query: 197
length of database: 6,186,964
effective HSP length: 87
effective length of query: 110
effective length of database: 3,433,153
effective search space: 377646830
effective search space used: 377646830
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)