TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000011_1.0 # Protein # Glutathione peroxidase 8 (GPx8) #
Homo sapiens # Complete
         (209 letters)

Database: bd_parva 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|68351525|gb|AAGK01000002.1| Theileria parva strain Muguga chr...    29   0.77 
gi|68352484|gb|AAGK01000001.1| Theileria parva strain Muguga chr...    25   8.5  

>gi|68351525|gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2
              chr2_complete, whole genome shotgun sequence
          Length = 1971884

 Score = 28.9 bits (63), Expect = 0.77
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -2

Query: 120    KEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVV 178
              K ++      + +T P+ H   +     EP  + L+++ K    WNFW  L   E   V
Sbjct: 843058 KRIKKSTLFTHKITQPLLH---LESPVTEPTLKHLLNTCKFYQNWNFWTELTKDETNTV 842891


>gi|68352484|gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1
               chr1_complete, whole genome shotgun sequence
          Length = 2540030

 Score = 25.4 bits (54), Expect = 8.5
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +1

Query: 1       MEPLAAYPLKCSGPRAKVFAVLLSIVLCTVTLFLLQLKFLKPKINSFYAFEVKDAKGRTV 60
               ++P+  YP         +FA L+S V  T+T  +  LK+  P  N+     +     +T+
Sbjct: 2499121 LKPVELYPFNL------IFATLVSFVSKTITYPIDTLKYFNP-CNNILELNISITHEKTM 2499279

Query: 61      SLEKYKGKV 69
                +  +  K+
Sbjct: 2499280 DISVFSHKL 2499306


  Database: bd_parva
    Posted date:  Mar 3, 2010 10:44 AM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.321    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,977,491
Number of Sequences: 9
Number of extensions: 28025
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 62
length of query: 209
length of database: 2,782,535
effective HSP length: 87
effective length of query: 122
effective length of database: 2,781,752
effective search space: 339373744
effective search space used: 339373744
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)