TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) #
Homo sapiens # Complete
         (221 letters)

Database: bd_parva 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|68352484|gb|AAGK01000001.1| Theileria parva strain Muguga chr...    28   1.9  
gi|68349971|gb|AAGK01000005.1| Theileria parva strain Muguga chr...    27   3.2  

>gi|68352484|gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1
              chr1_complete, whole genome shotgun sequence
          Length = 2540030

 Score = 27.7 bits (60), Expect = 1.9
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -1

Query: 82     LNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVN 141
              +N   + + NF  + LAFPC        G NS     L YV  G G    F +F+K  +N
Sbjct: 145895 VNEFPQFIYNFSFLSLAFPCIFL----*GQNSVFQAQLGYVGKGFGRT*YFGMFDKVIIN 145728


>gi|68349971|gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3
               ctg_530, whole genome shotgun sequence
          Length = 1317241

 Score = 26.9 bits (58), Expect = 3.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 22      TLKPQNRKV--DCNKGVTGTIYEYGALTLNGEEYIQF 56
               T +PQ   V  DC +      Y+YG + +N  E IQ+
Sbjct: 1106057 TARPQIHCVGDDCKRSDLNVYYQYGKMNVNPPELIQY 1106167



 Score = 26.2 bits (56), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 101    CNQFGKQEPGTNSEILLGLK 120
              C++ GK +PG NSE L+  K
Sbjct: 324421 CSEEGKLDPGENSEFLVDFK 324480



 Score = 25.4 bits (54), Expect = 9.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 157   PPTSDLLGSSSQLFWEPMKVHDIR 180
             PP     G   Q  WE +K HD++
Sbjct: 83272 PPREGTRGGREQFKWEDLKSHDLK 83201


  Database: bd_parva
    Posted date:  Feb 22, 2010  5:06 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.322    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,086,958
Number of Sequences: 9
Number of extensions: 29420
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 37
length of query: 221
length of database: 2,782,535
effective HSP length: 87
effective length of query: 134
effective length of database: 2,781,752
effective search space: 372754768
effective search space used: 372754768
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)