TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) #
Homo sapiens # Complete
         (197 letters)

Database: bd_parva 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|68349971|gb|AAGK01000005.1| Theileria parva strain Muguga chr...    27   2.6  
gi|68350595|gb|AAGK01000004.1| Theileria parva strain Muguga chr...    26   5.9  

>gi|68349971|gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3
              ctg_530, whole genome shotgun sequence
          Length = 1317241

 Score = 26.9 bits (58), Expect = 2.6
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
 Frame = +3

Query: 113    NEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK 172
              N+ + +   GYNVKF  F +I  + DD H ++ + + +      L +      T   ++K
Sbjct: 302505 NKALAKDEKGYNVKFREFYEI-PDKDDVH-IFNYYRFEHYFNHNLKDKELSYSTLIQMNK 302678

Query: 173    NGCVVKRYGPMEEPL---VIEKDLPHYF 197
              +GCV K   P+   L   V  K L H++
Sbjct: 302679 HGCVYKTDVPVYRALNLFVEGKVLEHHY 302762


>gi|68350595|gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4
               ctg_529, whole genome shotgun sequence
          Length = 1835834

 Score = 25.8 bits (55), Expect = 5.9
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
 Frame = +2

Query: 83      LVDLHARYAECGLRILAFPCNQFG---KQEPGSNEEIKEFAAGYNVKFDMFSKIC--VNG 137
               LVD+  RY +  L I +  C   G   K+EP        F  G++  +D   KI   +  
Sbjct: 1302230 LVDM--RYYDYSLDIWSIGCMLAGIIFKKEP--------FFYGHD-NYDQLVKIAKVLGT 1302376

Query: 138     DDAHPLWK--WMKIQPKGKGILGNAIKWNFTKFLIDKN 173
               +D H  ++   +K  P  + ILGN  K  +TKF+  +N
Sbjct: 1302377 EDLHRYFEKYGLKFAPAYQEILGNHSKKPWTKFVHHEN 1302490



 Score = 25.8 bits (55), Expect = 5.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 149     IQPKGKGILGNAIKWNF 165
               +QPKG+G++ +   WNF
Sbjct: 1712879 LQPKGRGLISSK*TWNF 1712929


  Database: bd_parva
    Posted date:  Feb 22, 2010  5:06 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.324    0.140    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,974,611
Number of Sequences: 9
Number of extensions: 27253
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 18
length of query: 197
length of database: 2,782,535
effective HSP length: 86
effective length of query: 111
effective length of database: 2,781,761
effective search space: 308775471
effective search space used: 308775471
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)