TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Homo sapiens # Complete
         (226 letters)

Database: bd_parva 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|68351525|gb|AAGK01000002.1| Theileria parva strain Muguga chr...    29   0.87 
gi|68352484|gb|AAGK01000001.1| Theileria parva strain Muguga chr...    28   1.1  
gi|68349971|gb|AAGK01000005.1| Theileria parva strain Muguga chr...    27   2.5  

>gi|68351525|gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2
               chr2_complete, whole genome shotgun sequence
          Length = 1971884

 Score = 28.9 bits (63), Expect = 0.87
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 118     TLKYVRPGGGFVPNFQLFEKGDVN-GEKEQKFYTFLKNSCPPTSELLGTSDRLFW 171
               T   V P G  VPNF LF    +  G+K+  F + LK+S  P  +L  T    FW
Sbjct: 1853075 TRNSVSPSGSIVPNFTLFSSYSLTLGDKKYSFAS-LKSS*SPPLKL--TISSKFW 1853230


>gi|68352484|gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1
               chr1_complete, whole genome shotgun sequence
          Length = 2540030

 Score = 28.5 bits (62), Expect = 1.1
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = -2

Query: 18      FVSQSRGQEKSKMDCHGGISGTIYEYGALTID-GEEYIPFKQYAGKYVLFVNVASYUGLT 76
               F+S SR  + S  + +GG +G++ +   L  +   ++ PF     KYV  V + +  GL 
Sbjct: 1704394 FISLSRNTDNSLPNTNGGHNGSVNDNQKLLDELVSDFRPFYDAVKKYVSDVKLGNLDGLD 1704215

Query: 77      --GQYIEL 82
                 G ++E+
Sbjct: 1704214 SFGSFVEV 1704191


>gi|68349971|gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3
              ctg_530, whole genome shotgun sequence
          Length = 1317241

 Score = 27.3 bits (59), Expect = 2.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 101    CNQFGKQEPGENSEILPTLK 120
              C++ GK +PGENSE L   K
Sbjct: 324421 CSEEGKLDPGENSEFLVDFK 324480


  Database: bd_parva
    Posted date:  Feb 22, 2010  5:06 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.321    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,053,265
Number of Sequences: 9
Number of extensions: 29061
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 42
length of query: 226
length of database: 2,782,535
effective HSP length: 87
effective length of query: 139
effective length of database: 2,781,752
effective search space: 386663528
effective search space used: 386663528
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)