TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Homo sapiens # Complete
         (190 letters)

Database: bd_parva 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|68349689|gb|AAGK01000006.1| Theileria parva strain Muguga chr...    32   0.078
gi|68352484|gb|AAGK01000001.1| Theileria parva strain Muguga chr...    26   4.3  
gi|68349971|gb|AAGK01000005.1| Theileria parva strain Muguga chr...    25   7.3  
gi|68350595|gb|AAGK01000004.1| Theileria parva strain Muguga chr...    25   7.3  
gi|68351525|gb|AAGK01000002.1| Theileria parva strain Muguga chr...    25   7.3  

>gi|68349689|gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3
              ctg_531, whole genome shotgun sequence
          Length = 570487

 Score = 32.0 bits (71), Expect = 0.078
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 59     RRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQ-NEHPVFA 117
              R L +  FP N+   ++   N+ I  +LKY+   GGY      ++K +V G  N   ++ 
Sbjct: 361272 RSLSIDYFPINRLSSRKKDYNQ-ITGTLKYLTQAGGYFKFMNHLRKLQVKGTFNPEDMYK 361448

Query: 118    YLKD 121
              YL D
Sbjct: 361449 YLDD 361460



 Score = 26.9 bits (58), Expect = 2.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 72     GHQENCQNEEILNSLKYVRPGGGYQPTFTLVQK 104
              G   N  N EILNS+ Y+ P G Y    TL+ K
Sbjct: 109566 GVNVNTANSEILNSMMYLMP-GNYFEGCTLITK 109471


>gi|68352484|gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1
               chr1_complete, whole genome shotgun sequence
          Length = 2540030

 Score = 26.2 bits (56), Expect = 4.3
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
 Frame = -2

Query: 51      NELQCRFPRRLVVLG---------FPCNQFGHQENCQNEEILNSLKYVR 90
               N ++C+F   +VV+            C  +GH  NC+  + L+S   VR
Sbjct: 1936261 NIVKCKFFILIVVIDKG*EVVDKEVKCGHYGHDSNCRKAQKLHSRMLVR 1936115


>gi|68349971|gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3
               ctg_530, whole genome shotgun sequence
          Length = 1317241

 Score = 25.4 bits (54), Expect = 7.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 19      EKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF 57
               E V F   R ++  +E +       +RDF QLN  +C F
Sbjct: 1145543 ENVKFVLERVKSPTLEALVKARKMLSRDFPQLNGAKCNF 1145659


>gi|68350595|gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4
              ctg_529, whole genome shotgun sequence
          Length = 1835834

 Score = 25.4 bits (54), Expect = 7.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 166    FRRYSRTFPTINIEP 180
              F++ S +FPT+N+EP
Sbjct: 539457 FKKSSTSFPTVNVEP 539501


>gi|68351525|gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2
               chr2_complete, whole genome shotgun sequence
          Length = 1971884

 Score = 25.4 bits (54), Expect = 7.3
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 17/89 (19%)
 Frame = +3

Query: 45      RDFT-QLNELQCRFPRRLVVL----------------GFPCNQFGHQENCQNEEILNSLK 87
               RDF  Q +  Q +F R L++L                 F  + F     CQN  + + L 
Sbjct: 1425249 RDFGFQTSFCQLQFYRTLIILLMT*CCLVSLLMNGFHSFTISSFQSLNLCQNFLLQSQLY 1425428

Query: 88      YVRPGGGYQPTFTLVQKCEVNGQNEHPVF 116
                ++P     P  TL++   +N   E PVF
Sbjct: 1425429 QLKPVHLVNPLQTLLKLVLLNYLQEQPVF 1425515


  Database: bd_parva
    Posted date:  Feb 22, 2010  5:06 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.323    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,785,958
Number of Sequences: 9
Number of extensions: 27287
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 46
length of query: 190
length of database: 2,782,535
effective HSP length: 85
effective length of query: 105
effective length of database: 2,781,770
effective search space: 292085850
effective search space used: 292085850
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)