TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) #
Homo sapiens # Complete
         (221 letters)

Database: bd_bovis 
           13 sequences; 8,173,701 total letters

Searching.............done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|154798391|gb|AAXT01000001.1| Babesia bovis strain T2Bo chromo...    28   1.4  
gi|154796419|gb|AAXT01000004.1| Babesia bovis strain T2Bo chromo...    27   4.1  
gi|154797556|gb|AAXT01000002.1| Babesia bovis strain T2Bo chromo...    27   4.1  
gi|154796781|gb|AAXT01000003.1| Babesia bovis strain T2Bo chromo...    27   4.1  

>gi|154798391|gb|AAXT01000001.1| Babesia bovis strain T2Bo chromosome 3
              gcontig_1104837696278, whole genome shotgun sequence
          Length = 2593320

 Score = 28.1 bits (61), Expect = 1.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 185    KFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQF 218
              +F     GVP +HW + +P + V S    YL++F
Sbjct: 686981 RFATFEAGVPAIHW*YNSPTTLVSSWGRTYLRRF 686880


>gi|154796419|gb|AAXT01000004.1| Babesia bovis strain T2Bo chromosome 4
              gcontig_1104837696380, whole genome shotgun sequence
          Length = 827912

 Score = 26.6 bits (57), Expect = 4.1
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = +1

Query: 23     LKPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAAQYPEL 82
              LKP  R    N GV G +YE   L+     Y+      G  VL V   A   +    P  
Sbjct: 192247 LKPLGRVFHINVGVCGHLYETFYLSSPCPNYLDTAVSTGMVVLIV*YFAVWNICKNEPTG 192426

Query: 83     NAL 85
              N L
Sbjct: 192427 NVL 192435


>gi|154797556|gb|AAXT01000002.1| Babesia bovis strain T2Bo chromosome 4
              gcontig_1104837696308, whole genome shotgun sequence
          Length = 1797577

 Score = 26.6 bits (57), Expect = 4.1
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 1      MFQQFQASCLVLFFLVGFAQQTLKPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQF 59
              +F  F  +C   F + GF   T       V+CN    G I +Y  ++L G+E +Q + +
Sbjct: 469755 LFYFFIPNC---FHVRGFRVDTGACHVHIVECNLASCGYINKYFQVSLIGQERLQMRDY 469922


>gi|154796781|gb|AAXT01000003.1| Babesia bovis strain T2Bo chromosome 2
              gcontig_1104837696614, whole genome shotgun sequence
          Length = 1729419

 Score = 26.6 bits (57), Expect = 4.1
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +2

Query: 99     FPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGD 139
              F C Q    E    SE++ G  Y   G  F P+F LFEK D
Sbjct: 535376 FYCLQLKNMEYYVPSEVMFGGCY--HGCAFRPAFVLFEKVD 535492



 Score = 25.4 bits (54), Expect = 9.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 195    VMHWFHQAPVSTVKSDILEYLKQ 217
              +++W    P ST   D+L+Y K+
Sbjct: 235816 ILYWLSALPYSTAYKDMLDYAKE 235748


  Database: bd_bovis
    Posted date:  Feb 25, 2010 11:15 AM
  Number of letters in database: 8,173,701
  Number of sequences in database:  13
  
Lambda     K      H
   0.322    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,134,346
Number of Sequences: 13
Number of extensions: 30269
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 79
length of query: 221
length of database: 2,724,567
effective HSP length: 87
effective length of query: 134
effective length of database: 2,723,436
effective search space: 364940424
effective search space used: 364940424
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
