TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000011_1.0 # Protein # Glutathione peroxidase 8 (GPx8) #
Homo sapiens # Complete
         (209 letters)

Database: bd_annulata 
           8 sequences; 8,358,125 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|71533066|emb|CR940352.2| Theileria annulata strain Ankara iso...    28   1.3  
gi|65304547|emb|CR940347.1| Theileria annulata strain Ankara iso...    26   5.0  
gi|65301918|emb|CR940348.1| Theileria annulata strain Ankara iso...    25   8.5  

>gi|71533066|emb|CR940352.2| Theileria annulata strain Ankara isolate clone
               C9, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces
          Length = 1898942

 Score = 28.1 bits (61), Expect = 1.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 109     NQFGESEPRPSKEVESFARKNYGVTFPIF 137
               NQ GES+ RPS    SF   N+ +  PI+
Sbjct: 1550719 NQLGESQGRPSITF*SFNHTNFFIFIPIY 1550805


>gi|65304547|emb|CR940347.1| Theileria annulata strain Ankara isolate clone
               C9, *** SEQUENCING IN PROGRESS ***
          Length = 2592520

 Score = 26.2 bits (56), Expect = 5.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 12      SGPRAKVFAVLLSIVLCTVTLFLLQLKFLKPKINSFYAF 50
               +G  A+   VLLSI + T+ L L   K   PK  SF+ F
Sbjct: 1395871 TGAIARSEQVLLSITVATLYL*LHSSKSFPPKQTSFFPF 1395755


>gi|65301918|emb|CR940348.1| Theileria annulata strain Ankara isolate
              clone C9, *** SEQUENCING IN PROGRESS ***
          Length = 1979170

 Score = 25.4 bits (54), Expect = 8.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 16     AKVFAVLLSIVLCTVTLFLLQLKF 39
              +K+F ++L I+L  + LFLL  K+
Sbjct: 285442 SKIFFIILYIILLILILFLLHYKY 285371


  Database: bd_annulata
    Posted date:  Feb 25, 2010 11:01 AM
  Number of letters in database: 8,358,125
  Number of sequences in database:  8
  
Lambda     K      H
   0.324    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,990,801
Number of Sequences: 8
Number of extensions: 28634
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 87
length of query: 209
length of database: 2,786,041
effective HSP length: 87
effective length of query: 122
effective length of database: 2,785,345
effective search space: 339812090
effective search space used: 339812090
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)