Find start end points: [4,7803][210,8394] Score 43408
Recovering alignment: Alignment recoveredxplicit read offfone 97%

genewise output
Score 125.25 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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Information
	Name gi|154346825|ref|NC_009327.1|:subseq(2259730,10000) is longer
than allowed name block (15). Truncating

SPP00000015_1.0    5 EYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLI 
                     EY+ P  L  + KYKYS+ D + +S YV+  +WN +V + P  +APN I 
                     EYIPPAYLPNLKKYKYSSTDFSIMSRYVLQRYWNFLVNLVPMTVAPNCI 
gi|154346825|re-2199 gtaccgttcataatattaagttaaactgcccttattgacgcaaggcata 
                     aatcccatcataaaaacgcatcttggattagagatttattctctccagt 
                     gccgtgtgccgggcgctcaccacgcgtgggacgctggttgcgccgatct 


SPP00000015_1.0   54 TFSGFLLVVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYT 
                     TF+GFL+ + + +++ YF   F+         P W      +  F   T 
                     TFTGFLIGMSSAVMLLYFF--FFEEGV----YPSWSLYYASFALFTYQT 
gi|154346825|re-2052 atagtcagattggaccttt  ttgggg    tcattcttgttgctatca 
                     ctcgtttgtcccttttatt  ttaagt    acggctaacctcttcaac 
                     cccgtcccgtagcgggtcc  ctagcg    cctgtaccctcaccccac 


SPP00000015_1.0  103 LDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGV 
                     LD +DGKQARRT + +PLGELFDHG D++   + ++ V  +     T + 
                     LDAIDGKQARRTGTGSPLGELFDHGCDAFLTPFVLLNVSLV-----TYM 
gi|154346825|re-1923 cggaggacgccagagaccggctgcgtggtcactgttagacg     ata 
                     tactagaacggcgcggctgattaaggacttccttttatgtt     cat 
                     acattcggggcccttcgccaacccctcccccgtgggtgttt     ccg 


SPP00000015_1.0  152 SVFVLYLLLWVVLFSFILSHWEKYNTGILFLPW--GYDISQVTISFVYI 
                     +    + LL    FS++   WE+++TG+  L +  G     +    ++I 
                     TPVERFWLLSFSSFSLFTIIWEQFSTGVFVLGYVNGPTEGIILNCVLFI 
gi|154346825|re-1791 acggcttcttttttactaaatgctaaggtgcgtgagcaggaacatgcta 
                     cctagtgttctcctgttcttgaatgcgttttgatagccagtttagtttt 
                     aaggccgggccacccgtcccgggccggacctccctcaggccccccgccc 


SPP00000015_1.0  199 VTAVVGVEAWYEP                                     
                     V+ V G   W  P                                     
                     VSGVYGESIWDTP                                     
gi|154346825|re-1644 gtggtggtatgac                                     
                     tcgtagactgacc                                     
                     cgcgtcgccgtgg                                     


//
>gi|154346825|ref|NC_009327.1|:subseq(2259730,10000).pep
EYIPPAYLPNLKKYKYSSTDFSIMSRYVLQRYWNFLVNLVPMTVAPNCITFTGFLIGMSS
AVMLLYFFFFEEGVYPSWSLYYASFALFTYQTLDAIDGKQARRTGTGSPLGELFDHGCDA
FLTPFVLLNVSLVTYMTPVERFWLLSFSSFSLFTIIWEQFSTGVFVLGYVNGPTEGIILN
CVLFIVSGVYGESIWDTP
//
>gi|154346825|ref|NC_009327.1|:subseq(2259730,10000).[2199:1604].sp
GAGTACATCCCGCCTGCGTATTTGCCCAACTTGAAGAAGTACAAGTACTCTAGCACAGAC
TTCTCAATCATGAGCCGGTATGTGCTGCAGCGATACTGGAACTTTTTGGTGAATCTTGTG
CCCATGACCGTCGCGCCAAATTGCATTACCTTCACCGGGTTTCTCATCGGCATGTCTTCA
GCGGTCATGCTGCTGTATTTCTTCTTCTTTGAAGAGGGCGTGTACCCCAGTTGGTCTCTA
TACTACGCCTCTTTCGCACTCTTCACCTACCAAACCCTAGACGCAATTGATGGCAAGCAG
GCGCGGCGCACCGGCACTGGTAGCCCGCTCGGCGAACTATTCGACCACGGCTGTGACGCC
TTCCTCACCCCGTTTGTGTTGTTGAATGTGAGTCTTGTTACCTACATGACACCAGTGGAG
CGCTTCTGGCTGTTGTCCTTCTCATCCTTCAGCCTGTTTACCATCATCTGGGAGCAGTTC
AGCACGGGGGTATTCGTCCTTGGCTACGTCAATGGCCCAACGGAGGGCATCATCCTCAAC
TGCGTGCTCTTCATCGTCTCGGGCGTGTATGGCGAGTCCATCTGGGATACGCCG
//
gi|154346825|ref|NC_009327.1|:subseq(2259730,10000)	GeneWise	match	2199	1606	134.23	-	.	gi|154346825|ref|NC_009327.1|:subseq(2259730,10000)-genewise-prediction-1
gi|154346825|ref|NC_009327.1|:subseq(2259730,10000)	GeneWise	cds	2199	1606	0.00	-	0	gi|154346825|ref|NC_009327.1|:subseq(2259730,10000)-genewise-prediction-1
//

