genewise output
Score 64.46 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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selenoprotein      1 MAPKRKAAAAAEAPAKKAKAPAKKKEAEKKEETAPVAADAGDGIVIEAC 
                     MAPKRKA+A  ++  KKA        A+ K +  P     G  +V+EAC 
                     MAPKRKASAKQDSEPKKA--------AKTKADAPP---SEGGVVVVEAC 
scaffold_35    -1332 agcacagtgacgagcaag        gaaagggcc   tgggggggggt 
                     tccagacccaaagacaac        cacacaccc   caggttttacg 
                     gggacgccgggccggggg        gggggcggg   ggccccccgcc 


selenoprotein     50 KSXGAFKTRATKLEKLIKEGAPGTSVSVNPDKPRKGCFEVRGPGGKTFV 
                     KSXGAFKTRA K+ K ++  A    V +N +KPRKG F V   G    V 
                     KSXGAFKTRANKVLKALEGKA---EVKINEEKPRKGAFVV-SVGDTKVV 
scaffold_35    -1218 aatggtaacgaagtagtggag   ggaaaggaccaggtgg tgggaagg 
                     agggctacgcaattactagac   atataaaacgagcttt ctgacatt 
                     gcacgcgccgcgcggtgacgg   gggccggggcgccccc ccccagcc 


selenoprotein     99 SLLDMPRPFTKLKALDVEALAEEVLAAL                      
                      LLDM RPF  LKALD++ +A +V  AL                      
                     ELLDMKRPFPALKALDMDDVAADVEKAL                      
scaffold_35    -1083 gccgaacctcgcagcgaggggggggagc                      
                     attatagctcctactataatccataact                      
                     gcccggggcggggggcgccccgccgggg                      


//
>scaffold_35.pep
MAPKRKASAKQDSEPKKAAKTKADAPPSEGGVVVVEACKSXGAFKTRANKVLKALEGKAE
VKINEEKPRKGAFVVSVGDTKVVELLDMKRPFPALKALDMDDVAADVEKAL
//
>scaffold_35.[1332:998].sp
ATGGCGCCGAAACGCAAGGCCTCCGCGAAGCAGGACAGCGAGCCGAAGAAGGCGGCGAAG
ACGAAGGCGGACGCGCCGCCGTCGGAGGGCGGCGTCGTCGTCGTCGAGGCCTGCAAGAGC
TGAGGCGCGTTCAAGACCCGCGCGAACAAGGTCTTGAAGGCTTTGGAAGGCAAGGCGGAG
GTGAAGATCAACGAGGAGAAGCCGCGCAAGGGCGCCTTCGTCGTCTCCGTCGGCGACACA
AAGGTCGTCGAGCTCCTCGACATGAAGCGGCCGTTCCCGGCGCTGAAGGCGCTGGACATG
GACGACGTCGCCGCGGACGTCGAGAAGGCGCTG
//
scaffold_35	GeneWise	match	1332	1000	75.44	-	.	scaffold_35-genewise-prediction-1
scaffold_35	GeneWise	cds	1332	1000	0.00	-	0	scaffold_35-genewise-prediction-1
//

