Command line: [exonerate -m p2g --showtargetgff -q selHsola.fa -t contighuxleyi2.fa]
Hostname: [ws101158.aulescm.upf.edu]

C4 Alignment:
------------
         Query: gi|158271075|gb|EDO96902.1| selenoprotein H [Chlamydomonas reinhardtii]
        Target: scaffold_5:subseq(1671230,10000) [revcomp]
         Model: protein2genome:local
     Raw score: 289
   Query range: 18 -> 127
  Target range: 1176 -> 621

   19 : LysAlaProAlaLysLysLysGluAlaGluLysLysGluGluThrAlaProValAlaAlaAs :   39
        ||||||||||||||||||      |||:::               |||      |||:::  
        LysAlaProAlaLysLysAlaProAlaLysAlaProAlaAlaLysAlaAlaSerAlaSerAl
 1176 : AAggcaccggcgaagaaggcgccggcaaaggcaccggcggcaaaggcggctagcgctagcgc : 1116

   40 : pAlaGlyAspGlyIleValIleGluAlaCysLysSer***GlyAlaPheLysThr{A}  >> :   58
         ...|||...   :!!..!||||||||||||||||||||||||||||||||||||{|}    
        aGlyGlySerAspValThrIleGluAlaCysLysSer***GlyAlaPheLysThr{A}++  
 1115 : tggcggcagcgacgTCACCATCGAGGCTTGCAAGAGCTGAGGCGCATTCAAGACG{C}gt.. : 1056

   59 : >> Target Intron 1 >>>>  {rg}AlaThrLysLeuGluLysLeuIleLysGluGly :   69
                231 bp           {||}|||.!!|||:!!!!:  !|||:!!|||! !!.!
                               ++{rg}AlaAlaLysValAspAlaLeuValLysAlaAla
 1055 : .......................ag{GC}GCCGCCAAGGTGGACGCGCTCGTCAAGGCAGCG :  795

   70 : AlaProGlyThrSerValSerValAsnProAspLysProArgLysGlyCysPheGluValAr :   90
        !.!||||||.!!!!!|||!!!:!!||| !!!!:|||||||||||||||||||||||||||!:
        ValProGlyAlaCysValThrIleAsnAlaGluLysProArgLysGlyCysPheGluValLy
  794 : GTTCCTGGCGCGTGCGTCACCATCAACGCCGAGAAGCCGCGCAAGGGGTGCTTCGAGGTCAA :  732

   91 : gGlyProGlyGlyLysThrPheValSerLeuLeuAspMetProArgProPheThrLysLeuL :  111
        !!.!   ..!|||! !||| !!|||||||||  !||||||||||||||||||||||||||||
        sAla---AsnGlyThrThrValValSerLeuThrAspMetProArgProPheThrLysLeuL
  731 : GGCG---AACGGGACGACGGTCGTCTCTCTGACCGACATGCCGCGCCCCTTCACGAAGCTCA :  672

  112 : ysAlaLeuAspValGluAlaLeuAlaGluGluValLeuAlaAlaLeuLys :  127
        |||||||||||:!!!!:! !:!!|||! !!!:|||:!!  !|||||||||
        ysAlaLeuAspMetAspGluValAlaAlaAspValValLysAlaLeuLys
  671 : AGGCGCTCGACATGGACGAGGTCGCCGCGGACGTCGTCAAGGCCCTCAAG :  622

vulgar: gi|158271075|gb|EDO96902.1| 18 127 . scaffold_5:subseq(1671230,10000) 1176 621 - 289 M 39 117 S 0 1 5 0 2 I 0 227 3 0 2 S 1 2 M 33 99 G 1 0 M 35 105
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_5:subseq(1671230,10000)	exonerate:protein2genome:local	gene	622	1176	289	-	.	gene_id 1 ; sequence gi|158271075|gb|EDO96902.1| ; gene_orientation +
scaffold_5:subseq(1671230,10000)	exonerate:protein2genome:local	cds	1059	1176	.	-	.	
scaffold_5:subseq(1671230,10000)	exonerate:protein2genome:local	exon	1059	1176	.	-	.	insertions 0 ; deletions 0
scaffold_5:subseq(1671230,10000)	exonerate:protein2genome:local	splice5	1057	1058	.	-	.	intron_id 1 ; splice_site "GT"
scaffold_5:subseq(1671230,10000)	exonerate:protein2genome:local	intron	828	1058	.	-	.	intron_id 1
scaffold_5:subseq(1671230,10000)	exonerate:protein2genome:local	splice3	828	829	.	-	.	intron_id 0 ; splice_site "AG"
scaffold_5:subseq(1671230,10000)	exonerate:protein2genome:local	cds	622	827	.	-	.	
scaffold_5:subseq(1671230,10000)	exonerate:protein2genome:local	exon	622	827	.	-	.	insertions 0 ; deletions 1
scaffold_5:subseq(1671230,10000)	exonerate:protein2genome:local	similarity	622	1176	289	-	.	alignment_id 1 ; Query gi|158271075|gb|EDO96902.1| ; Align 1177 19 117 ; Align 826 59 99 ; Align 727 93 105
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis

