Command line: [exonerate -m p2g --showtargetgff -q selIsola.fa -t contigbrazi2.fa]
Hostname: [ws101158.aulescm.upf.edu]

C4 Alignment:
------------
         Query: SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Homo sapiens # Complete
        Target: gi|154346825|ref|NC_009327.1|:subseq(2259730,10000) Leishmania braziliensis MHOM/BR/75/M2904 chromosome 35:[revcomp]
         Model: protein2genome:local
     Raw score: 158
   Query range: 4 -> 71
  Target range: 2199 -> 1998

    5 : GluTyrValSerProGluGlnLeuAlaGlyPheAspLysTyrLysTyrSerAlaValAspTh :   25
        ||||||:!! !!|||! ! ! ||| !!..!!!. ! |||||||||||||||::!..!|||  
        GluTyrIleProProAlaTyrLeuProAsnLeuLysLysTyrLysTyrSerSerThrAspPh
 2199 : GAGTACATCCCGCCTGCGTATTTGCCCAACTTGAAGAAGTACAAGTACTCTAGCACAGACTT : 2139

   26 : rAsnProLeuSerLeuTyrValMetHisProPheTrpAsnThrIleValLysValPheProT :   46
        !:::  !:!!|||! !||||||:!!!!.! !!:!||||||  !:!:|||!!.:!! ! |||!
        eSerIleMetSerArgTyrValLeuGlnArgTyrTrpAsnPheLeuValAsnLeuValProM
 2138 : CTCAATCATGAGCCGGTATGTGCTGCAGCGATACTGGAACTTTTTGGTGAATCTTGTGCCCA : 2076

   47 : hrTrpLeuAlaProAsnLeuIleThrPheSerGlyPheLeuLeuValValPheAsnPheLeu :   66
         !   :!!|||||||||! !|||||||||!!!|||||||||:!!! !:!!! !:::   :!!
        etThrValAlaProAsnCysIleThrPheThrGlyPheLeuIleGlyMetSerSerAlaVal
 2075 : TGACCGTCGCGCCAAATTGCATTACCTTCACCGGGTTTCTCATCGGCATGTCTTCAGCGGTC : 2016

   67 : LeuMetAlaTyrPhe :   71
        :!!:!!  !||||||
        MetLeuLeuTyrPhe
 2015 : ATGCTGCTGTATTTC : 1999

vulgar: SPP00000015_1.0 4 71 . gi|154346825|ref|NC_009327.1|:subseq(2259730,10000) 2199 1998 - 158 M 67 201
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|154346825|ref|NC_009327.1|:subseq(2259730,10000)	exonerate:protein2genome:local	gene	1999	2199	158	-	.	gene_id 1 ; sequence SPP00000015_1.0 ; gene_orientation .
gi|154346825|ref|NC_009327.1|:subseq(2259730,10000)	exonerate:protein2genome:local	cds	1999	2199	.	-	.	
gi|154346825|ref|NC_009327.1|:subseq(2259730,10000)	exonerate:protein2genome:local	exon	1999	2199	.	-	.	insertions 0 ; deletions 0
gi|154346825|ref|NC_009327.1|:subseq(2259730,10000)	exonerate:protein2genome:local	similarity	1999	2199	158	-	.	alignment_id 1 ; Query SPP00000015_1.0 ; Align 2200 5 201
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Homo sapiens # Complete
        Target: gi|154346825|ref|NC_009327.1|:subseq(2259730,10000) Leishmania braziliensis MHOM/BR/75/M2904 chromosome 35:[revcomp]
         Model: protein2genome:local
     Raw score: 134
   Query range: 85 -> 140
  Target range: 1974 -> 1809

   86 : ProAspTrpValTrpIleValValGlyIleLeuAsnPheValAlaTyrThrLeuAspGlyVa :  106
        |||..!|||  !     !  !!.!..!.!!  !  !|||..!  ! ! |||||||||!.!:!
        ProSerTrpSerLeuTyrTyrAlaSerPheAlaLeuPheThrTyrGlnThrLeuAspAlaIl
 1974 : CCCAGTTGGTCTCTATACTACGCCTCTTTCGCACTCTTCACCTACCAAACCCTAGACGCAAT : 1914

  107 : lAspGlyLysGlnAlaArgArgThrAsnSerSerThrProLeuGlyGluLeuPheAspHisG :  127
        !||||||||||||||||||||||||..!!!!.!!!:!|||||||||||||||||||||||||
        eAspGlyLysGlnAlaArgArgThrGlyThrGlySerProLeuGlyGluLeuPheAspHisG
 1913 : TGATGGCAAGCAGGCGCGGCGCACCGGCACTGGTAGCCCGCTCGGCGAACTATTCGACCACG : 1851

  128 : lyLeuAspSerTrpSerCysValTyrPheValValThrVal :  140
        ||! !|||:!!!::  !  !  !!:! ! :!!:!!!.!|||
        lyCysAspAlaPheLeuThrProPheValLeuLeuAsnVal
 1850 : GCTGTGACGCCTTCCTCACCCCGTTTGTGTTGTTGAATGTG : 1810

vulgar: SPP00000015_1.0 85 140 . gi|154346825|ref|NC_009327.1|:subseq(2259730,10000) 1974 1809 - 134 M 55 165
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|154346825|ref|NC_009327.1|:subseq(2259730,10000)	exonerate:protein2genome:local	gene	1810	1974	134	-	.	gene_id 2 ; sequence SPP00000015_1.0 ; gene_orientation .
gi|154346825|ref|NC_009327.1|:subseq(2259730,10000)	exonerate:protein2genome:local	cds	1810	1974	.	-	.	
gi|154346825|ref|NC_009327.1|:subseq(2259730,10000)	exonerate:protein2genome:local	exon	1810	1974	.	-	.	insertions 0 ; deletions 0
gi|154346825|ref|NC_009327.1|:subseq(2259730,10000)	exonerate:protein2genome:local	similarity	1810	1974	134	-	.	alignment_id 2 ; Query SPP00000015_1.0 ; Align 1975 86 165
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis

