TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Homo
sapiens # Complete
         (590 letters)

Database: ramorum.fa 
           572 sequences; 14,903,514 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113920801|gb|AAQX01000368.1| Phytophthora ramorum strain Pr10...    40   0.002
gi|113920997|gb|AAQX01000172.1| Phytophthora ramorum strain Pr10...    34   0.13 
gi|113921116|gb|AAQX01000053.1| Phytophthora ramorum strain Pr10...    34   0.13 
gi|113920770|gb|AAQX01000399.1| Phytophthora ramorum strain Pr10...    33   0.22 
gi|113920995|gb|AAQX01000174.1| Phytophthora ramorum strain Pr10...    33   0.38 
gi|113920846|gb|AAQX01000323.1| Phytophthora ramorum strain Pr10...    32   0.49 
gi|113920863|gb|AAQX01000306.1| Phytophthora ramorum strain Pr10...    32   0.49 
gi|113921098|gb|AAQX01000071.1| Phytophthora ramorum strain Pr10...    32   0.49 
gi|113921119|gb|AAQX01000050.1| Phytophthora ramorum strain Pr10...    32   0.64 
gi|113921165|gb|AAQX01000004.1| Phytophthora ramorum strain Pr10...    32   0.64 
gi|113921153|gb|AAQX01000016.1| Phytophthora ramorum strain Pr10...    32   0.84 
gi|113920655|gb|AAQX01000514.1| Phytophthora ramorum strain Pr10...    31   1.4  
gi|113920739|gb|AAQX01000430.1| Phytophthora ramorum strain Pr10...    31   1.4  
gi|113920644|gb|AAQX01000525.1| Phytophthora ramorum strain Pr10...    30   1.9  
gi|113920661|gb|AAQX01000508.1| Phytophthora ramorum strain Pr10...    30   1.9  
gi|113920668|gb|AAQX01000501.1| Phytophthora ramorum strain Pr10...    30   1.9  
gi|113920924|gb|AAQX01000245.1| Phytophthora ramorum strain Pr10...    30   1.9  
gi|113920984|gb|AAQX01000185.1| Phytophthora ramorum strain Pr10...    30   1.9  
gi|113920609|gb|AAQX01000560.1| Phytophthora ramorum strain Pr10...    30   2.4  
gi|113920785|gb|AAQX01000384.1| Phytophthora ramorum strain Pr10...    30   2.4  
gi|113920844|gb|AAQX01000325.1| Phytophthora ramorum strain Pr10...    30   2.4  
gi|113920989|gb|AAQX01000180.1| Phytophthora ramorum strain Pr10...    30   2.4  
gi|113920910|gb|AAQX01000259.1| Phytophthora ramorum strain Pr10...    30   3.2  
gi|113920980|gb|AAQX01000189.1| Phytophthora ramorum strain Pr10...    30   3.2  
gi|113921140|gb|AAQX01000029.1| Phytophthora ramorum strain Pr10...    30   3.2  
gi|113920639|gb|AAQX01000530.1| Phytophthora ramorum strain Pr10...    29   4.2  
gi|113920798|gb|AAQX01000371.1| Phytophthora ramorum strain Pr10...    29   4.2  
gi|113920819|gb|AAQX01000350.1| Phytophthora ramorum strain Pr10...    29   4.2  
gi|113920926|gb|AAQX01000243.1| Phytophthora ramorum strain Pr10...    29   4.2  
gi|113921097|gb|AAQX01000072.1| Phytophthora ramorum strain Pr10...    29   4.2  
gi|113920619|gb|AAQX01000550.1| Phytophthora ramorum strain Pr10...    29   5.4  
gi|113920640|gb|AAQX01000529.1| Phytophthora ramorum strain Pr10...    29   5.4  
gi|113920731|gb|AAQX01000438.1| Phytophthora ramorum strain Pr10...    29   5.4  
gi|113920761|gb|AAQX01000408.1| Phytophthora ramorum strain Pr10...    29   5.4  
gi|113920825|gb|AAQX01000344.1| Phytophthora ramorum strain Pr10...    29   5.4  
gi|113920845|gb|AAQX01000324.1| Phytophthora ramorum strain Pr10...    29   5.4  
gi|113921063|gb|AAQX01000106.1| Phytophthora ramorum strain Pr10...    29   5.4  
gi|113920610|gb|AAQX01000559.1| Phytophthora ramorum strain Pr10...    28   7.1  
gi|113920680|gb|AAQX01000489.1| Phytophthora ramorum strain Pr10...    28   7.1  
gi|113920704|gb|AAQX01000465.1| Phytophthora ramorum strain Pr10...    28   7.1  
gi|113920866|gb|AAQX01000303.1| Phytophthora ramorum strain Pr10...    28   7.1  
gi|113920871|gb|AAQX01000298.1| Phytophthora ramorum strain Pr10...    28   7.1  
gi|113920904|gb|AAQX01000265.1| Phytophthora ramorum strain Pr10...    28   7.1  
gi|113920955|gb|AAQX01000214.1| Phytophthora ramorum strain Pr10...    28   7.1  
gi|113920974|gb|AAQX01000195.1| Phytophthora ramorum strain Pr10...    28   7.1  
gi|113921012|gb|AAQX01000157.1| Phytophthora ramorum strain Pr10...    28   7.1  
gi|113921017|gb|AAQX01000152.1| Phytophthora ramorum strain Pr10...    28   7.1  
gi|113921058|gb|AAQX01000111.1| Phytophthora ramorum strain Pr10...    28   7.1  
gi|113920617|gb|AAQX01000552.1| Phytophthora ramorum strain Pr10...    28   9.3  
gi|113920719|gb|AAQX01000450.1| Phytophthora ramorum strain Pr10...    28   9.3  
gi|113920889|gb|AAQX01000280.1| Phytophthora ramorum strain Pr10...    28   9.3  
gi|113920909|gb|AAQX01000260.1| Phytophthora ramorum strain Pr10...    28   9.3  
gi|113920919|gb|AAQX01000250.1| Phytophthora ramorum strain Pr10...    28   9.3  
gi|113921057|gb|AAQX01000112.1| Phytophthora ramorum strain Pr10...    28   9.3  
gi|113921089|gb|AAQX01000080.1| Phytophthora ramorum strain Pr10...    28   9.3  

>gi|113920801|gb|AAQX01000368.1| Phytophthora ramorum strain Pr102
             Pramorum_Cont368, whole genome shotgun sequence
          Length = 218554

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 29/61 (47%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
 Frame = +1

Query: 9     RGPPS---PGPAAQPPAPPRRRA------RSLALLGALL-AAAAAAAVRVCARHAEAQAA 58
             RGPP+   P PA  PP PPR RA      RS     A   AA +A A R CAR  EA  A
Sbjct: 91600 RGPPARPRPRPARPPPRPPRPRAPRPATSRSSPTASARCPAAPSACAPRACARPTEAAVA 91779

Query: 59    A 59
             A
Sbjct: 91780 A 91782


>gi|113920997|gb|AAQX01000172.1| Phytophthora ramorum strain Pr102
             Pramorum_Cont172, whole genome shotgun sequence
          Length = 39701

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -2

Query: 3     RARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAA 45
             R+RP ++ PP   PA QPP P RRR RS +   +   +A  AA
Sbjct: 22252 RSRPTRQRPP---PAHQPPRPRRRRVRSASTSSST*RSATGAA 22133


>gi|113921116|gb|AAQX01000053.1| Phytophthora ramorum strain Pr102
            Pramorum_Cont53, whole genome shotgun sequence
          Length = 309763

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 3    RARPGQRGPPSPGPAAQPPAPP---RRRARSLALLGALLAAAAAAAVRVCARHAEAQAA 58
            R R  QR    P  + +PP P    RR+AR+  LL +L +AAAA  VR     A A  A
Sbjct: 9509 RGRRTQRSASYPAASPRPPDPTLGGRRQARAPQLLVSLWSAAAARTVRALPCRAAAARA 9685



Query= gi|157389007|ref|NP_001004294.3| selenoprotein N, 1 [Danio
rerio]
         (557 letters)

Database: ramorum.fa 
           572 sequences; 14,903,514 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113921153|gb|AAQX01000016.1| Phytophthora ramorum strain Pr10...    33   0.21 
gi|113920675|gb|AAQX01000494.1| Phytophthora ramorum strain Pr10...    29   3.9  
gi|113920686|gb|AAQX01000483.1| Phytophthora ramorum strain Pr10...    29   5.1  
gi|113920844|gb|AAQX01000325.1| Phytophthora ramorum strain Pr10...    29   5.1  
gi|113920731|gb|AAQX01000438.1| Phytophthora ramorum strain Pr10...    28   8.6  
gi|113920953|gb|AAQX01000216.1| Phytophthora ramorum strain Pr10...    28   8.6  

>gi|113921153|gb|AAQX01000016.1| Phytophthora ramorum strain Pr102
              Pramorum_Cont16, whole genome shotgun sequence
          Length = 254036

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 502    VVHHINANNFLDQTSMKPEDEGPGLSFSAG--FEDPSTSTYIRFLQEGLEKAKPYLES 557
              VVH  ++N+ L++ +  P+ E  GLS   G  F      T  RF+Q+ LEKA  ++++
Sbjct: 200026 VVHSYSSNSLLEEFNSAPKSEKWGLSAIKGHLFIFAKDQTGSRFIQQKLEKADEHMKA 200199



Query= SPP00000114_1.0 # Protein # Selenoprotein N (SelN) # Mus
musculus # Complete
         (557 letters)

Database: ramorum.fa 
           572 sequences; 14,903,514 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113921165|gb|AAQX01000004.1| Phytophthora ramorum strain Pr10...    35   0.092
gi|113921153|gb|AAQX01000016.1| Phytophthora ramorum strain Pr10...    32   0.78 
gi|113921116|gb|AAQX01000053.1| Phytophthora ramorum strain Pr10...    31   1.0  
gi|113921097|gb|AAQX01000072.1| Phytophthora ramorum strain Pr10...    31   1.3  
gi|113920864|gb|AAQX01000305.1| Phytophthora ramorum strain Pr10...    30   1.7  
gi|113920871|gb|AAQX01000298.1| Phytophthora ramorum strain Pr10...    30   2.3  
gi|113920930|gb|AAQX01000239.1| Phytophthora ramorum strain Pr10...    30   2.3  
gi|113920825|gb|AAQX01000344.1| Phytophthora ramorum strain Pr10...    30   3.0  
gi|113921017|gb|AAQX01000152.1| Phytophthora ramorum strain Pr10...    30   3.0  
gi|113921099|gb|AAQX01000070.1| Phytophthora ramorum strain Pr10...    30   3.0  
gi|113921154|gb|AAQX01000015.1| Phytophthora ramorum strain Pr10...    30   3.0  
gi|113921071|gb|AAQX01000098.1| Phytophthora ramorum strain Pr10...    29   3.9  
gi|113921119|gb|AAQX01000050.1| Phytophthora ramorum strain Pr10...    29   3.9  
gi|113920883|gb|AAQX01000286.1| Phytophthora ramorum strain Pr10...    29   5.1  
gi|113920980|gb|AAQX01000189.1| Phytophthora ramorum strain Pr10...    29   5.1  
gi|113920715|gb|AAQX01000454.1| Phytophthora ramorum strain Pr10...    28   6.6  
gi|113920761|gb|AAQX01000408.1| Phytophthora ramorum strain Pr10...    28   6.6  
gi|113920889|gb|AAQX01000280.1| Phytophthora ramorum strain Pr10...    28   6.6  
gi|113920919|gb|AAQX01000250.1| Phytophthora ramorum strain Pr10...    28   6.6  
gi|113920924|gb|AAQX01000245.1| Phytophthora ramorum strain Pr10...    28   6.6  
gi|113920926|gb|AAQX01000243.1| Phytophthora ramorum strain Pr10...    28   6.6  
gi|113920961|gb|AAQX01000208.1| Phytophthora ramorum strain Pr10...    28   6.6  
gi|113920974|gb|AAQX01000195.1| Phytophthora ramorum strain Pr10...    28   6.6  
gi|113921033|gb|AAQX01000136.1| Phytophthora ramorum strain Pr10...    28   6.6  
gi|113920617|gb|AAQX01000552.1| Phytophthora ramorum strain Pr10...    28   8.6  
gi|113920785|gb|AAQX01000384.1| Phytophthora ramorum strain Pr10...    28   8.6  
gi|113920844|gb|AAQX01000325.1| Phytophthora ramorum strain Pr10...    28   8.6  
gi|113920881|gb|AAQX01000288.1| Phytophthora ramorum strain Pr10...    28   8.6  
gi|113920904|gb|AAQX01000265.1| Phytophthora ramorum strain Pr10...    28   8.6  
gi|113920970|gb|AAQX01000199.1| Phytophthora ramorum strain Pr10...    28   8.6  
gi|113921087|gb|AAQX01000082.1| Phytophthora ramorum strain Pr10...    28   8.6  

>gi|113921165|gb|AAQX01000004.1| Phytophthora ramorum strain Pr102
              Pramorum_Cont4, whole genome shotgun sequence
          Length = 145259

 Score = 34.7 bits (78), Expect = 0.092
 Identities = 21/42 (50%), Positives = 25/42 (59%)
 Frame = -2

Query: 9      RRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACA 50
              RR   P PGA PA PRRR  A +L      AAA+  ++RACA
Sbjct: 110752 RRDSRPPPGAAPAWPRRRPVAPSL------AAASCPSSRACA 110645


>gi|113921153|gb|AAQX01000016.1| Phytophthora ramorum strain Pr102
            Pramorum_Cont16, whole genome shotgun sequence
          Length = 254036

 Score = 31.6 bits (70), Expect = 0.78
 Identities = 24/52 (46%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
 Frame = -2

Query: 2    GQARPAA------RRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAAR 47
            GQ R AA      RR H P P A PAPP             LA AAA AAAR
Sbjct: 5926 GQRRLAALAPRRSRRRHGPAPAAAPAPP-------------LADAAATAAAR 5810



 
