TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Homo
sapiens # Complete
         (397 letters)

Database: pseudonana.fa 
           113 sequences; 29,453,142 total letters

Searching........................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|209487151|gb|AAFD02000010.1| Thalassiosira pseudonana CCMP133...   103   2e-22
gi|209487159|gb|AAFD02000002.1| Thalassiosira pseudonana CCMP133...    46   5e-05
gi|209487156|gb|AAFD02000005.1| Thalassiosira pseudonana CCMP133...    34   0.16 
gi|209487138|gb|AAFD02000023.1| Thalassiosira pseudonana CCMP133...    34   0.20 
gi|209487149|gb|AAFD02000012.1| Thalassiosira pseudonana CCMP133...    31   1.7  
gi|209487135|gb|AAFD02000026.1| Thalassiosira pseudonana CCMP133...    29   6.5  
gi|209487137|gb|AAFD02000024.1| Thalassiosira pseudonana CCMP133...    28   8.5  

>gi|209487151|gb|AAFD02000010.1| Thalassiosira pseudonana CCMP1335
               chromosome 6 THAPSchr_6_Cont10, whole genome shotgun
               sequence
          Length = 2071480

 Score =  103 bits (258), Expect = 2e-22
 Identities = 104/420 (24%), Positives = 182/420 (43%), Gaps = 47/420 (11%)
 Frame = -1

Query: 4       YEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIV-KVFPTWLAPNLITFSGFLLVV 62
               Y Y++P  ++    Y+Y   D + L  +V+ P    +V  V P WLAPN IT  G   ++
Sbjct: 1747558 YYYLTPNAVSKLPNYQYHGRDMSLLYKHVLSPLAGWLVDNVTPVWLAPNSITLFGLAWMI 1747379

Query: 63      FNFLLMAYFDPDFY----------ASAPGHKH---VPDWVWIVVGILNFVAYTLDGVDGK 109
                ++ ++ ++ P  Y          AS   + +   VP+W++++  I      TLD +DGK
Sbjct: 1747378 LSYSVIFWYCPGLYEGNTNVHTDGASNNNNNNRSGVPEWIFLLNCIAMLTYQTLDNMDGK 1747199

Query: 110     QARRTNSSTPLGELFDHGLDSWSCV-----------YFVVTVYSIFGRGST-----GVSV 153
               QAR+T SS+PLG LFDHG D+ + +            F   +   +  GS      G   
Sbjct: 1747198 QARKTGSSSPLGLLFDHGCDAINSILGSANWIAAMGLFPSNINGEYSGGSIVSEFFGGDA 1747019

Query: 154     FVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQVTI--SFVYIVTAVVGVEAWYEP 211
                +  LL+   + +F +S WE+Y TG L LP     S+  +  + + +++   GV  W E 
Sbjct: 1747018 TLAALLILCPMIAFYISTWEQYYTGELILPPFNGPSEGLLLGASLSLISWGWGVMFWQET 1746839

Query: 212     FLFNFLYRDLFTA-----------MIIGCALCVTLPMSLLNFFRSYKNNTLKLNSVYE-- 258
                + +     L  +           M+ G    + L + L      ++  TLK+  V    
Sbjct: 1746838 GIVDGSVELLKNSGLGESMKPVLDMVYGRVRNMDL-IVLSTVLALFQEVTLKVLFVIRGY 1746662

Query: 259     --AMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFANSTCQLIVCQMSSTR 316
                 + +    P  + ++ST  ++     ++   PR    +V   F   T QL++  M    
Sbjct: 1746661 GISTLRTILPHAMLVISTLVLINYDDTVMLRRPRTVMHLVSGLFVEQTTQLMLDHMVEE- 1746485

Query: 317     CPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRVVKQLSSHFQIY 376
                    + ++  F +  ++ L +A++   ++    T AF LA+   GV V        QIY
Sbjct: 1746484 ----EYKVLKRFCMYPMMALALAAFDGGLVSVEATDAFLLAYA-TGVWVYLAFKIRVQIY 1746320


>gi|209487159|gb|AAFD02000002.1| Thalassiosira pseudonana CCMP1335
               chromosome 1 THAPSchr_1_Cont2, whole genome shotgun sequence
          Length = 2672327

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 5/186 (2%)
 Frame = -3

Query: 37      WNTIVKVFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGIL 96
               ++ +  + P  +APN+IT +GF       L  A++  + Y +         W  +V  I+
Sbjct: 1102917 FDRVANLIPDNVAPNVITAAGFAC-----LGQAWYVQNLYGAI--FPTAVTWFAVVNIII 1102759

Query: 97      NFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVL 156
                F+    + VD + A R    + LGELF +  D  S V+ ++      G G++ V+ +  
Sbjct: 1102758 FFIT---NSVDSRHADRLRQRSALGELFKYSCDCCSTVFLIILATYCLG-GTSNVTQWYA 1102591

Query: 157     YLLLWVVLFSFILSHWEKYNTGILF-LPWGYDISQVTISFVYIVTAVVGVEAW----YEP 211
                    +VLF+  LS + + N G+ + +  G     +T+  V  + A VG++ W    YE 
Sbjct: 1102590 VQATQLVLFTKHLSAFHR-NAGLRYNVLTGPGEVILTVVVVLALRAAVGLD-WLVRLYEM 1102417

Query: 212     FLFNFL 217
                L  F+
Sbjct: 1102416 TLHRFM 1102399



 

Query= SPP00000111_1.0 # Protein # Selenoprotein I (SelI) # Mus
musculus # Complete
         (402 letters)

Database: pseudonana.fa 
           113 sequences; 29,453,142 total letters

Searching........................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|209487151|gb|AAFD02000010.1| Thalassiosira pseudonana CCMP133...   100   1e-21
gi|209487159|gb|AAFD02000002.1| Thalassiosira pseudonana CCMP133...    44   3e-04
gi|209487156|gb|AAFD02000005.1| Thalassiosira pseudonana CCMP133...    34   0.16 
gi|209487138|gb|AAFD02000023.1| Thalassiosira pseudonana CCMP133...    33   0.46 
gi|209487137|gb|AAFD02000024.1| Thalassiosira pseudonana CCMP133...    32   0.78 
gi|209487153|gb|AAFD02000008.1| Thalassiosira pseudonana CCMP133...    30   2.3  
gi|209487149|gb|AAFD02000012.1| Thalassiosira pseudonana CCMP133...    29   6.6  
gi|209487135|gb|AAFD02000026.1| Thalassiosira pseudonana CCMP133...    28   8.7  
gi|209487160|gb|AAFD02000001.1| Thalassiosira pseudonana CCMP133...    28   8.7  

>gi|209487151|gb|AAFD02000010.1| Thalassiosira pseudonana CCMP1335
               chromosome 6 THAPSchr_6_Cont10, whole genome shotgun
               sequence
          Length = 2071480

 Score =  100 bits (250), Expect = 1e-21
 Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 29/213 (13%)
 Frame = -1

Query: 4       YEYVSPEQLSGFDKYKYSALDTNPLSLYIMHPFWNTIVKKKKQVFPTWLAPNLITFSGFM 63
               Y Y++P  +S    Y+Y   D + L  +++ P    +V     V P WLAPN IT  G  
Sbjct: 1747558 YYYLTPNAVSKLPNYQYHGRDMSLLYKHVLSPLAGWLVDN---VTPVWLAPNSITLFGLA 1747388

Query: 64      LLVFNFLLLTYFDPDFY----------ASAPGHKH---VPDWVWIVVGILNFAAYTLDGV 110
                ++ ++ ++ ++ P  Y          AS   + +   VP+W++++  I      TLD +
Sbjct: 1747387 WMILSYSVIFWYCPGLYEGNTNVHTDGASNNNNNNRSGVPEWIFLLNCIAMLTYQTLDNM 1747208

Query: 111     DGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGPTGVS-------------- 156
               DGKQAR+T SS+PLG LFDHG D+ + +       +  G  P+ ++              
Sbjct: 1747207 DGKQARKTGSSSPLGLLFDHGCDAINSILGSANWIAAMGLFPSNINGEYSGGSIVSEFFG 1747028

Query: 157     --VFVLYLLLWVVLFSFILSHWEKYNTGVLFLP 187
                   +  LL+   + +F +S WE+Y TG L LP
Sbjct: 1747027 GDATLAALLILCPMIAFYISTWEQYYTGELILP 1746929


>gi|209487159|gb|AAFD02000002.1| Thalassiosira pseudonana CCMP1335
               chromosome 1 THAPSchr_1_Cont2, whole genome shotgun sequence
          Length = 2672327

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 5/195 (2%)
 Frame = -3

Query: 32      IMHPFWNTIVKKKKQVFPTWLAPNLITFSGFMLLVFNFLLLTYFDPDFYASAPGHKHVPD 91
               + H     +  +   + P  +APN+IT +GF  L   + +   +   F  +         
Sbjct: 1102944 LTHRATKNLFDRVANLIPDNVAPNVITAAGFACLGQAWYVQNLYGAIFPTAV-------T 1102786

Query: 92      WVWIVVGILNFAAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRG 151
               W + VV I+ F  +  + VD + A R    + LGELF +  D  S V+ ++      G G
Sbjct: 1102785 W-FAVVNIIIF--FITNSVDSRHADRLRQRSALGELFKYSCDCCSTVFLIILATYCLG-G 1102618

Query: 152     PTGVSVFVLYLLLWVVLFSFILSHWEKYNTGVLF-LPWGYDISQVTISFVYIVTAVVGVE 210
                + V+ +       +VLF+  LS + + N G+ + +  G     +T+  V  + A VG++
Sbjct: 1102617 TSNVTQWYAVQATQLVLFTKHLSAFHR-NAGLRYNVLTGPGEVILTVVVVLALRAAVGLD 1102441

Query: 211     AW----YEPFLFNFL 221
                W    YE  L  F+
Sbjct: 1102440 -WLVRLYEMTLHRFM 1102399



Query= # SelI # Phitofora infesta 1 # Complete
         (457 letters)

Database: pseudonana.fa 
           113 sequences; 29,453,142 total letters

Searching........................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|209487151|gb|AAFD02000010.1| Thalassiosira pseudonana CCMP133...   155   6e-38
gi|209487159|gb|AAFD02000002.1| Thalassiosira pseudonana CCMP133...    42   7e-04
gi|209487155|gb|AAFD02000006.1| Thalassiosira pseudonana CCMP133...    32   0.92 
gi|209487150|gb|AAFD02000011.1| Thalassiosira pseudonana CCMP133...    29   7.8  

>gi|209487151|gb|AAFD02000010.1| Thalassiosira pseudonana CCMP1335
               chromosome 6 THAPSchr_6_Cont10, whole genome shotgun
               sequence
          Length = 2071480

 Score =  155 bits (392), Expect = 6e-38
 Identities = 127/443 (28%), Positives = 207/443 (46%), Gaps = 52/443 (11%)
 Frame = -1

Query: 40      YVSQEGSEKLRTYEYHGADNSLVYK-VLTPMNNFLV-KLLPLWLAPNLITLIGLILVGGS 97
               Y++     KL  Y+YHG D SL+YK VL+P+  +LV  + P+WLAPN ITL GL  +  S
Sbjct: 1747552 YLTPNAVSKLPNYQYHGRDMSLLYKHVLSPLAGWLVDNVTPVWLAPNSITLFGLAWMILS 1747373

Query: 98      HTLFVFLCPFLV-------------------GDAPWWAMVVAALALFTYQTLDNLDGKQA 138
               +++  + CP L                       P W  ++  +A+ TYQTLDN+DGKQA
Sbjct: 1747372 YSVIFWYCPGLYEGNTNVHTDGASNNNNNNRSGVPEWIFLLNCIAMLTYQTLDNMDGKQA 1747193

Query: 139     RRTKSSSPLGLLFDHGCVALNVSVGTMTMASILQM--------------------GTTWR 178
               R+T SSSPLGLLFDHGC A+N  +G+    + + +                    G    
Sbjct: 1747192 RKTGSSSPLGLLFDHGCDAINSILGSANWIAAMGLFPSNINGEYSGGSIVSEFFGGDATL 1747013

Query: 179     TLGFVLSGHFVFIFATWE-YYSGSLELPLYNGPTEGYLIGIALKLVTAVVGVGFWNQEMI 237
                   +L     F  +TWE YY+G L LP +NGP+EG L+G +L L++   GV FW +   
Sbjct: 1747012 AALLILCPMIAFYISTWEQYYTGELILPPFNGPSEGLLLGASLSLISWGWGVMFWQE--- 1746842

Query: 238     EGVQNNSLFVIVTM-ISSCFTLLVKYVGGLIFCIPAVRFAN-LSMFCFITSVRNALHAVR 295
                G+ + S+ ++    +      ++  V G +  +  +  +  L++F  +T     L  +R
Sbjct: 1746841 TGIVDGSVELLKNSGLGESMKPVLDMVYGRVRNMDLIVLSTVLALFQEVT--LKVLFVIR 1746668

Query: 296     LNQDSVLVAFTRLLPFVVINTLAGLWALYSPSDIFSTHPRMFLWMLGLLNSKLVLHLMLA 355
                   S L     +LP  ++  ++ L  +     +    PR  + ++  L  +    LML 
Sbjct: 1746667 GYGISTL---RTILPHAML-VISTLVLINYDDTVMLRRPRTVMHLVSGLFVEQTTQLMLD 1746500

Query: 356     HLCGEEYHPFRKTLVPIFYVAGHCAFCMVEGIYDAINEELI---VREFFFLSLSAAVHIV 412
               H+  EEY   ++           C + M+     A +  L+     + F L+ +  V + 
Sbjct: 1746499 HMVEEEYKVLKR----------FCMYPMMALALAAFDGGLVSVEATDAFLLAYATGVWVY 1746350

Query: 413     ITV-----VWEVKNVLGVSVFTI 430
               +       ++E+ +VLG+  F I
Sbjct: 1746349 LAFKIRVQIYEICDVLGIWCFDI 1746281





