TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Homo
sapiens # Complete
         (397 letters)

Database: brevicollis.fa 
           218 sequences; 41,633,360 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_12                                                            64   3e-10
scaffold_247                                                           30   5.4  
scaffold_22                                                            30   5.4  
scaffold_7                                                             29   7.0  
scaffold_33                                                            29   9.2  
scaffold_20                                                            29   9.2  
scaffold_17                                                            29   9.2  
scaffold_14                                                            29   9.2  
scaffold_2                                                             29   9.2  

>scaffold_12
          Length = 1128436

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 29/56 (51%), Positives = 39/56 (69%)
 Frame = -1

Query: 85     VPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTV 140
              VP W +++  +  F   T+D +DGKQARRT +++PLGELFDHG D+ S V  VV V
Sbjct: 883606 VPSWAYVLTALGLFFYQTMDNLDGKQARRTGNASPLGELFDHGCDAVSTVVVVVGV 883439





Query= SPP00000111_1.0 # Protein # Selenoprotein I (SelI) # Mus
musculus # Complete
         (402 letters)

Database: brevicollis.fa 
           218 sequences; 41,633,360 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_12                                                            63   4e-10
scaffold_6                                                             30   3.2  
scaffold_14                                                            30   4.2  
scaffold_7                                                             29   7.1  
scaffold_20                                                            29   9.3  

>scaffold_12
          Length = 1128436

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 29/56 (51%), Positives = 39/56 (69%)
 Frame = -1

Query: 89     VPDWVWIVVGILNFAAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTV 144
              VP W +++  +  F   T+D +DGKQARRT +++PLGELFDHG D+ S V  VV V
Sbjct: 883606 VPSWAYVLTALGLFFYQTMDNLDGKQARRTGNASPLGELFDHGCDAVSTVVVVVGV 883439




Query= # SelI # Phitofora infesta 1 # Complete
         (457 letters)

Database: brevicollis.fa 
           218 sequences; 41,633,360 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_12                                                            78   2e-14
scaffold_17                                                            32   0.99 

>scaffold_12
          Length = 1128436

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = -1

Query: 105    CPFLVGDAPWWAMVVAALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHGCVALNVSVGT 164
              C   V   P WA V+ AL LF YQT+DNLDGKQARRT ++SPLG LFDHGC A++  V  
Sbjct: 883627 CVLCVPQVPSWAYVLTALGLFFYQTMDNLDGKQARRTGNASPLGELFDHGCDAVSTVVVV 883448

Query: 165    MTMASILQM 173
              + +  +LQ+
Sbjct: 883447 VGVTVMLQV 883421




Query= # SelI plasmodium chabaudi # Complete
         (397 letters)

Database: brevicollis.fa 
           218 sequences; 41,633,360 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_12                                                            64   3e-10
scaffold_247                                                           30   5.4  
scaffold_22                                                            30   5.4  
scaffold_7                                                             29   7.0  
scaffold_33                                                            29   9.2  
scaffold_20                                                            29   9.2  
scaffold_17                                                            29   9.2  
scaffold_14                                                            29   9.2  
scaffold_2                                                             29   9.2  

>scaffold_12
          Length = 1128436

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 29/56 (51%), Positives = 39/56 (69%)
 Frame = -1

Query: 85     VPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTV 140
              VP W +++  +  F   T+D +DGKQARRT +++PLGELFDHG D+ S V  VV V
Sbjct: 883606 VPSWAYVLTALGLFFYQTMDNLDGKQARRTGNASPLGELFDHGCDAVSTVVVVVGV 883439



